| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998820
Identifier: 121998820
GI number: 121998820
Start: 2244274
End: 2244996
Strand: Reverse
Name: 121998820
Synonym: Hhal_2041
Alternate gene names: NA
Gene position: 2244996-2244274 (Counterclockwise)
Preceding gene: 121998821
Following gene: 121998819
Centisome position: 83.82
GC content: 69.02
Gene sequence:
>723_bases GTGTATCCCGGCCTCGAATCCTGCCTGTCCGCGCCGATCCCCGGCGGCTGCCATGCGCTGGCCCGCGTCCGCGCGCCTCT CCACGCCCCCTGTTCCGCGCTGCGGCCCACCCCGGGTTGTGCCCGGGCCGGCGGGCGGTGGCGCTTTCCGGCAACAGCCC CTTTGAGCAAGGAGGTCTCCATGCGCAACGTTTCCCCACGCATCCTCGGCGGCTGTGCGCTGCTCACCGCGGGCGCCCTG GTGGCGAGCCCGGCGGTGGCCGAGCACAGCTTCTTCTTCAACTACAGCCACACGCCGGTCTACACCGCGCTGGACTCCGA CGTGGAAGACAGCGACCTCTCCGGCAACGCCTTCGAGTTCGGCACCGGTATCACCGACGAGCTGCGCGCCGGCGTCTACC ACGAGCGGCTGGATGGCACCGGTGGTGCCAGCGCCAACATCCAGGGCATCAGCGCCGAGTACGGCATGCTCGAGACCGGC GACTTCATGGGCAGTGTCGGCTTCATGGTGGGCAATGGCCGCTCGGACAACGGCAACAGCCTGGTGGCGGACATCTACGG CCGCGCTGCGCTGCTGGCCAACGACCACGCCAACCTGAACGCCAAGCTGGCCTACCGCACGGTGCCGGACAGCGACTTTG CCCAGGACTTTGACGGCGTCGCCGATGACGCCAGCGACACGCACGGCTTCACGCTGAGTGTCGGCTTCGGCGTCCACTTC TGA
Upstream 100 bases:
>100_bases GTTGAGCTGGTTCCGGTCCCGTTGCTAACTTCTCGTGAACGGTGGTGCGCAGGAGGCGCGCCCGGTTTCCGGGGAGTCGG TGATAAGGAGGTCCCGCGCC
Downstream 100 bases:
>100_bases CTGAGGATCCGATCCGCCAACGGACCCCGCTCCCGCAGGTGGGAGCAGCCCAGCGCAAACAGAGGAGGTTGACCATGCAC ACGGGTGTCAAGCAGACCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MYPGLESCLSAPIPGGCHALARVRAPLHAPCSALRPTPGCARAGGRWRFPATAPLSKEVSMRNVSPRILGGCALLTAGAL VASPAVAEHSFFFNYSHTPVYTALDSDVEDSDLSGNAFEFGTGITDELRAGVYHERLDGTGGASANIQGISAEYGMLETG DFMGSVGFMVGNGRSDNGNSLVADIYGRAALLANDHANLNAKLAYRTVPDSDFAQDFDGVADDASDTHGFTLSVGFGVHF
Sequences:
>Translated_240_residues MYPGLESCLSAPIPGGCHALARVRAPLHAPCSALRPTPGCARAGGRWRFPATAPLSKEVSMRNVSPRILGGCALLTAGAL VASPAVAEHSFFFNYSHTPVYTALDSDVEDSDLSGNAFEFGTGITDELRAGVYHERLDGTGGASANIQGISAEYGMLETG DFMGSVGFMVGNGRSDNGNSLVADIYGRAALLANDHANLNAKLAYRTVPDSDFAQDFDGVADDASDTHGFTLSVGFGVHF >Mature_240_residues MYPGLESCLSAPIPGGCHALARVRAPLHAPCSALRPTPGCARAGGRWRFPATAPLSKEVSMRNVSPRILGGCALLTAGAL VASPAVAEHSFFFNYSHTPVYTALDSDVEDSDLSGNAFEFGTGITDELRAGVYHERLDGTGGASANIQGISAEYGMLETG DFMGSVGFMVGNGRSDNGNSLVADIYGRAALLANDHANLNAKLAYRTVPDSDFAQDFDGVADDASDTHGFTLSVGFGVHF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25020; Mature: 25020
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYPGLESCLSAPIPGGCHALARVRAPLHAPCSALRPTPGCARAGGRWRFPATAPLSKEVS CCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCCCCCH MRNVSPRILGGCALLTAGALVASPAVAEHSFFFNYSHTPVYTALDSDVEDSDLSGNAFEF HCCCCHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEC GTGITDELRAGVYHERLDGTGGASANIQGISAEYGMLETGDFMGSVGFMVGNGRSDNGNS CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCHHCCCCEEEECCCCCCCCE LVADIYGRAALLANDHANLNAKLAYRTVPDSDFAQDFDGVADDASDTHGFTLSVGFGVHF EEEECCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCEECC >Mature Secondary Structure MYPGLESCLSAPIPGGCHALARVRAPLHAPCSALRPTPGCARAGGRWRFPATAPLSKEVS CCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCCCCCH MRNVSPRILGGCALLTAGALVASPAVAEHSFFFNYSHTPVYTALDSDVEDSDLSGNAFEF HCCCCHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEC GTGITDELRAGVYHERLDGTGGASANIQGISAEYGMLETGDFMGSVGFMVGNGRSDNGNS CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCHHCCCCEEEECCCCCCCCE LVADIYGRAALLANDHANLNAKLAYRTVPDSDFAQDFDGVADDASDTHGFTLSVGFGVHF EEEECCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA