| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998586
Identifier: 121998586
GI number: 121998586
Start: 1978679
End: 1981147
Strand: Reverse
Name: 121998586
Synonym: Hhal_1807
Alternate gene names: NA
Gene position: 1981147-1978679 (Counterclockwise)
Preceding gene: 121998587
Following gene: 121998585
Centisome position: 73.97
GC content: 71.04
Gene sequence:
>2469_bases TTGGCGAACACATCTGACAGCGGACGAAGGGGCGAGCCCGTGCGCAAGGCGATCCGCGGCCTCGCCGGCCTGGCGGGACT GTCACTGGTCTCAGTGGCAGCCGCGGTGGAGGTCAGCCTCGGGACCATCGAGGGGCGCTCCGAGGCCGGCGAGCCGGTCT CGGCGCGGATCCCCTTGCGGGACGTTAGCCCCGACGAACTCGCGCGCCTCGATGTCGGGCTAGCCCCGGGCCGAGTCTTC AATCGGGCCGGGGTCGACCGGATGCCCGAATTGTCGTTGCTCGACTTCGAGCTGGTCGCCTCCGGCGAAGACGCCCCCTA TATTGCCGTCACCAGTCAGGAGCCCATCGACCAGCCCCTGCTGGATTTCCTGATCCAGGTCAGCTGGCCCGAAGGGGACC TGGTCCGCGAGTACACCCTGCTCCTTGAACGTCCCACGACCGCTGACGAGGATGCGCCGACCCAAGGGCAGCCCCTGGTT CGCGAGGGCGAGCCGTTCGAGGAGATCACCCGCGACGGCGAGCGTGAGCGCCGCTCGACGGCCTACGGGCCGGTGGAAGA GGGGGATACCCTCTGGCGGATCGCCTCGGAGCACCGCCCGGATGACTCCGTCACCGTGGCGCAGACGATGCTGGCCATCC AGCGGCTCAACCCGCGCGCCTTCGCCGGTGACAACGTCAACGACCTGCTCAGCGGCTGGTGGCTGAAACTGCCCAGTCGC GAGCAGATCGAGGAGTTGACCGCCGGCGAGGCTCAGGCCATCTATGAGGACCACCTGGACAGCTGGGTACCGCCGGCCGA GCGCCGGGCGGCCATCGAGGAACTCGACGAGGCGGTGCCGATCCCCGATCTGCCGGATCCGGAGCAGGTGGCAGAGGCAC CGACCGCCGAGGAGGCCCGGCTGCGGATCCTCGCCCTCGGTGACGAGGAGGGCACCGAAGAGGTCCTGTCACTCCTCGAT ACCGAGCTGGAGGCCTCGGAGGCCAATGTGCGCCGGCTGCAGGGGGCGCTGGCCGCCCTGCGCGAGGAGCGGGCCAGTCT CCGCTCGGAGCGCGAAAGCCTCAAGGCGCAGGTGGAAGACCTGAGCCAGCGGGTAGCAGCGCTCGAGCGGCTGGTGGACC TGGACATGGAGGGGCTGCTGCCGCCGCCGGATGCCGAGCCGACGCCGATCGTGCCGCTGCCCGAGGTGGATGAGCCCCTG GATCCCCTGCGCGAGGCGGAGCCGGTGCCCACGGAGGCCGATCCGCCAACACCCGAGCGCGAAGAAGAGCCCGAGGAAGA GGTCGGCTGGGCGCAGTGGTTGTCCGGTGACGGTGATGTCACCGCCGCCGACCTGTGGCGCGACGAGGAGGCACGGCGGC AGATGCTGATCGCCACCGGAGGAACCCTGCTGGCGCTCGCCGTGGTTGCCGGCTTGCTGCTGCGCCGCCGGCGGCGGCGT GCGAATACCCAGGAGCCGGAGGGGCTGCGCCTCGATCGCGGTGACCTGGACTTCGATTTCGACCATAGTGCCCGGCGGGA TGCCCTGGAGCTAGCCGACGAGTACCTGGCGGATAACGATCTGCGTCGGGCCCGGGACGTGCTGGAGCGTGGCATCCATC GCGAGCCGGCGCGGACCGATCTGCGCCTGCGGCTGCTGGAGGTCCTCTCCCGCATGGGTGAGCGGGAGGCCTTCCTGGCC CAGGCGCAGGATCTCTACGACCGGACGCGCAGCGATGCCGATCCGGCCTGGCAGGCGGCCGTGGCCCTGGGTGTGGCCTT CGTACCCGATGCCCCGCTGTTCGCGGGTGCCGCGGCGGCTCGCCCGGCGGCGGAGGACGCGGCCACGGATGCCGAGGTCC CGGAGGACTCAGCAGGGGAGGCCGAGGCCGGACTCGACACCAAGCCGGATCTGGAGGATCTGGACCTCGGGCTGGACGGC GGCGACGGCGACGATGCCGGTGCGCAGTCGACCTCTGAGGACGACGACTTCGACCGCCGGCTGGATGCGGCCTTCGACGA GCAGCCGCAGGAGACGGAGCCGGAGGCCGCGGAGGCGCCCGCCACCGATAACGAGCCGGACGCCACCGAGGAGCCGGAGC CGGCCATGACGCGTGAGCCGGAGGCGAGCGCCGGCGCGCAGGACGTGGCCGATGAGCTCTTTGGCGGGGATGACGCCGCC GGCGACGAACTCGACGAGATGGATCTCGACAGCCTGTTCAGCGAGGAAGACGATGACACCCCGGGCGGTCTCGACCTGGA TGAGGCCGGAGAGGGGCCCGCGGAGGGCGACCTGGAGGCCGAGGCGGAGCAGTCCCTGGGGGTCGGCGAGGGCGATGAGG CCGATACCAAGCTCGACCTGGCCCGGGCGTACATCGACCTGGGCGACGAGCCGGGGGCCCGCAGCCTGCTGGAGGAGGTC CTGGAGGAAGGTACCGAGTCGCAGCGCGAGAGTGCCCGGCAGATCCTGGCTGAGCTCAGCGGCGAGTAG
Upstream 100 bases:
>100_bases GAGGACATCAGCCACGAGCGGGGTCTCGATCTCTGGGTGGTGGCCGATAACGTCCGCAAGGGGGCGGCGCTGAACAGCGT GCAGATTGCGGAGCTGCTGA
Downstream 100 bases:
>100_bases GCGGGCAGGCGGTGGCGGAACGAGGGGCAGAGCAACGCATTGCCCTGGTGCTGGAGTACGACGGCACCGGCTTCAGCGGC TGGCAGCGACAGGACGACGC
Product: hypothetical protein
Products: NA
Alternate protein names: FimV Protein; Tfp Pilus Assembly Protein FimV-Like Protein; FimV N-Terminal Domain Protein; LysM Domain Protein; Motility Protein FimV; Type 4 Pilus Biogenesis; Type IV Pilus Assembly Protein TapV; TPR Repeat-Containing Protein; FimV C-Terminal Domain-Containing Protein; AAA ATPase; Protein Containing Tetratricopeptide Repeats; LysM Domain-Containing Protein; ATPase; Tfp Pilus Assembly Protein FimV-Like; Transmembrane Tfp Pilus Assembly Protein FimV; FimV N-Terminal Domain; FimV N-Terminal Domain-Containing Protein; FimV Type IV Pilus Assembly Protein
Number of amino acids: Translated: 822; Mature: 821
Protein sequence:
>822_residues MANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLRDVSPDELARLDVGLAPGRVF NRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPLLDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLV REGEPFEEITRDGERERRSTAYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEARLRILALGDEEGTEEVLSLLD TELEASEANVRRLQGALAALREERASLRSERESLKAQVEDLSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPL DPLREAEPVPTEADPPTPEREEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTDLRLRLLEVLSRMGEREAFLA QAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAARPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDG GDGDDAGAQSTSEDDDFDRRLDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDLARAYIDLGDEPGARSLLEEV LEEGTESQRESARQILAELSGE
Sequences:
>Translated_822_residues MANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLRDVSPDELARLDVGLAPGRVF NRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPLLDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLV REGEPFEEITRDGERERRSTAYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEARLRILALGDEEGTEEVLSLLD TELEASEANVRRLQGALAALREERASLRSERESLKAQVEDLSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPL DPLREAEPVPTEADPPTPEREEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTDLRLRLLEVLSRMGEREAFLA QAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAARPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDG GDGDDAGAQSTSEDDDFDRRLDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDLARAYIDLGDEPGARSLLEEV LEEGTESQRESARQILAELSGE >Mature_821_residues ANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLRDVSPDELARLDVGLAPGRVFN RAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPLLDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLVR EGEPFEEITRDGERERRSTAYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSRE QIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEARLRILALGDEEGTEEVLSLLDT ELEASEANVRRLQGALAALREERASLRSERESLKAQVEDLSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPLD PLREAEPVPTEADPPTPEREEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRRA NTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTDLRLRLLEVLSRMGEREAFLAQ AQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAARPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDGG DGDDAGAQSTSEDDDFDRRLDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAAG DELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDLARAYIDLGDEPGARSLLEEVL EEGTESQRESARQILAELSGE
Specific function: Unknown
COG id: COG3170
COG function: function code NU; Tfp pilus assembly protein FimV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89227; Mature: 89096
Theoretical pI: Translated: 3.81; Mature: 3.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLR CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC DVSPDELARLDVGLAPGRVFNRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPL CCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHCCCCEEECCCCCCEEEECCCCCCHHHH LDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLVREGEPFEEITRDGERERRST HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHC AYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEAR HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCC LRILALGDEEGTEEVLSLLDTELEASEANVRRLQGALAALREERASLRSERESLKAQVED EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPLDPLREAEPVPTEADPPTPER HHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC EEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR CCCCHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHEEHCCCHHHHHHHHHHHHHHHHHHHH ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH LRLRLLEVLSRMGEREAFLAQAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAA HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCHHHC RPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDGGDGDDAGAQSTSEDDDFDRR CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH LDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA HHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDL CCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHH ARAYIDLGDEPGARSLLEEVLEEGTESQRESARQILAELSGE HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure ANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC DVSPDELARLDVGLAPGRVFNRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPL CCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHCCCCEEECCCCCCEEEECCCCCCHHHH LDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLVREGEPFEEITRDGERERRST HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHC AYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEAR HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCC LRILALGDEEGTEEVLSLLDTELEASEANVRRLQGALAALREERASLRSERESLKAQVED EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPLDPLREAEPVPTEADPPTPER HHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC EEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR CCCCHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHEEHCCCHHHHHHHHHHHHHHHHHHHH ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH LRLRLLEVLSRMGEREAFLAQAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAA HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCHHHC RPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDGGDGDDAGAQSTSEDDDFDRR CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH LDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA HHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDL CCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHH ARAYIDLGDEPGARSLLEEVLEEGTESQRESARQILAELSGE HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA