| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998498
Identifier: 121998498
GI number: 121998498
Start: 1885709
End: 1886497
Strand: Reverse
Name: 121998498
Synonym: Hhal_1719
Alternate gene names: NA
Gene position: 1886497-1885709 (Counterclockwise)
Preceding gene: 121998499
Following gene: 121998495
Centisome position: 70.43
GC content: 75.03
Gene sequence:
>789_bases ATGACCGAAGGGGCGCCGGCGATCCTCGGTCGGTGCGCCTTCGCCACGGTGCGCGGCTTGACGGTCCACGGTAGTGGCGC CCTGGCGGGGCTGGCCGGGTTCCCCCAGGCGGTGGAGTTCCGCGGCCGCGGCGGCGACGACCATGCGCTGCCGGCGGCCA AGGAGCAAGTGGTCTTCCGCCGCGTGGTGCGCTACCAGGATGGCGCCGATCCCGAGCCCGGTGGTCGGCTGGATCTCATC GGCACGCTGGTCCGCCGCCTCGATGCCAGCCGCCGGGCGGGCTACGCCGGCGCGTGCGTGGCAGTGGCCCACCGCAATCT AGAGGCCTACGCGACGGCGCTGGACGAAGCGCAGGGGCTGATCCGTCAGGTAGACGAGGTCCTTGCCGAGGGCAGTGCCG CGCGCTGGTTGCGGGAGGCCGATAGCGGGCGCGGGGCGGGTCGCCGGCGCTTCGGATTCGAGGGGCGTGGCCCCGGTCGC GTGCTGTGGCTCCACCGCAGCACCGCCGCCGAGGCCGACCCGGAGCTGGTTCCCGAGGCGCTACGCCAGCTGGCCTGGCT GGATGAGCACGCGCTGACCGGGGTGCTGATCTTCCCGGCGGTACGGCCGGGCTCCCGCGCCGTGGACAGCGGCCTGATCG CCGGCTGCCGCCGCGCCAAGCAGCAGGAGATCGAGGGCGTCGAGGCTGGCTTCCGCGCCGAGTTCGAGCGCCGCCTGGCG GAGATCGAGTACGAGTACCAGGCGGCCGCCCGGGCACCGGCGCCACCGGGGCCGCGCGGCGGCGACTAG
Upstream 100 bases:
>100_bases ACGACGATATCCGCGACATCTTCGCCTGGATCTACGGCCAGTTCGGCGGCGGGCGGATGGGGCCGACCTGGTGGCAGCGG ATCCTGGAGTGGCTGCGCCT
Downstream 100 bases:
>100_bases GGCACCACCAGCACCGGGAGTTGCACCGTCTCGATCAGCGAGCGGGTGTTGTGCTCGGCCAGCAGGGCGCTGCGGCGGCT GATGATCAGCTTGTCCACGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MTEGAPAILGRCAFATVRGLTVHGSGALAGLAGFPQAVEFRGRGGDDHALPAAKEQVVFRRVVRYQDGADPEPGGRLDLI GTLVRRLDASRRAGYAGACVAVAHRNLEAYATALDEAQGLIRQVDEVLAEGSAARWLREADSGRGAGRRRFGFEGRGPGR VLWLHRSTAAEADPELVPEALRQLAWLDEHALTGVLIFPAVRPGSRAVDSGLIAGCRRAKQQEIEGVEAGFRAEFERRLA EIEYEYQAAARAPAPPGPRGGD
Sequences:
>Translated_262_residues MTEGAPAILGRCAFATVRGLTVHGSGALAGLAGFPQAVEFRGRGGDDHALPAAKEQVVFRRVVRYQDGADPEPGGRLDLI GTLVRRLDASRRAGYAGACVAVAHRNLEAYATALDEAQGLIRQVDEVLAEGSAARWLREADSGRGAGRRRFGFEGRGPGR VLWLHRSTAAEADPELVPEALRQLAWLDEHALTGVLIFPAVRPGSRAVDSGLIAGCRRAKQQEIEGVEAGFRAEFERRLA EIEYEYQAAARAPAPPGPRGGD >Mature_261_residues TEGAPAILGRCAFATVRGLTVHGSGALAGLAGFPQAVEFRGRGGDDHALPAAKEQVVFRRVVRYQDGADPEPGGRLDLIG TLVRRLDASRRAGYAGACVAVAHRNLEAYATALDEAQGLIRQVDEVLAEGSAARWLREADSGRGAGRRRFGFEGRGPGRV LWLHRSTAAEADPELVPEALRQLAWLDEHALTGVLIFPAVRPGSRAVDSGLIAGCRRAKQQEIEGVEAGFRAEFERRLAE IEYEYQAAARAPAPPGPRGGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27966; Mature: 27835
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEGAPAILGRCAFATVRGLTVHGSGALAGLAGFPQAVEFRGRGGDDHALPAAKEQVVFR CCCCCHHHHHHHHHHHHHCEEEECCCCHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHH RVVRYQDGADPEPGGRLDLIGTLVRRLDASRRAGYAGACVAVAHRNLEAYATALDEAQGL HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IRQVDEVLAEGSAARWLREADSGRGAGRRRFGFEGRGPGRVLWLHRSTAAEADPELVPEA HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHH LRQLAWLDEHALTGVLIFPAVRPGSRAVDSGLIAGCRRAKQQEIEGVEAGFRAEFERRLA HHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIEYEYQAAARAPAPPGPRGGD HHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TEGAPAILGRCAFATVRGLTVHGSGALAGLAGFPQAVEFRGRGGDDHALPAAKEQVVFR CCCCHHHHHHHHHHHHHCEEEECCCCHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHH RVVRYQDGADPEPGGRLDLIGTLVRRLDASRRAGYAGACVAVAHRNLEAYATALDEAQGL HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IRQVDEVLAEGSAARWLREADSGRGAGRRRFGFEGRGPGRVLWLHRSTAAEADPELVPEA HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHH LRQLAWLDEHALTGVLIFPAVRPGSRAVDSGLIAGCRRAKQQEIEGVEAGFRAEFERRLA HHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIEYEYQAAARAPAPPGPRGGD HHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA