| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998301
Identifier: 121998301
GI number: 121998301
Start: 1646195
End: 1647685
Strand: Reverse
Name: 121998301
Synonym: Hhal_1519
Alternate gene names: NA
Gene position: 1647685-1646195 (Counterclockwise)
Preceding gene: 121998302
Following gene: 121998300
Centisome position: 61.52
GC content: 64.92
Gene sequence:
>1491_bases ATGGCCGTGTCGCCGAGGGTAGCTAGGGCGCGGGCGCTGCCGGGCGCCGCGGCCGCCTTGGGGCTTCTGCTGATTTCCGG GGCCAGTATCGCTTCGACACAGTGGACCTTCACCCCGCGCATGACCGTTGGTCAGGAGTGGACCGACAACGCCGATTTTT CCCCGCGGGGTGCAGAGGAGAGTGACCTGGTTACGCTCTTGCGGCCGAGCTTGACCCTGAGTGGAGAGGGCGCGCGTGCC GAACTCGACCTCAATTACTCGTGGGACAACCGGCTTTACTGGCGCGATAGCGACCGGGACCGAAGTACCCACAATCTGCG CGGAAGTGGCAACGCCGAGTTGGTGCGGGAGTCGATCTTCGTGGAGGGCTCCATCCGCCGCAGTGTGCGGGCGGAATCGA TCTTCGATCCGGTAACCGCGCGGGATCAGCAGGAGACGACCCGCTACCGCATCAGCCCTTACTGGGTGTGGCGGCAGGGT CGCTTCTCGGAGCAAGAGGTGCGTTACGTCTTCGACGAGGCCCGTTACCACCGATCGGATCGCCAGCCGCAACAGGTGCA TCGCGCCCAATACCAGCTGGATAGCGGCCCGCAGTTCGGTCGCACCTTCTGGCAGTTCCGCTCCGAACGCAACTGGGATC GCTTCGACGATCCGGAGCGCGCCGAGATTGATCGTTTCTCCAACCAGGCCACCTTGGGGTACCGGTTCGGCCGGTCGTTG CGCCTGAGCCTATCCGGATCGGATGGCTGGATTCGGGTCGAGGATCGGCGCCGCGACACCCAGAGCTGGCGGGTCAACGC CGACTGGGACATCACCCGGAATACGCAGATATCTGGGAGTTACGGCCAGTTCAAGGACCAGATCGACGACACGGATCAGA CGAATCGCCGAGATCAGCGATCGTTGGGCTTGGTCCACCAGGCGCCGCGCTCCACCTGGCGGCTCTCCTACGCCGAGGGG CGGACGGACGGCTTGGGACGCGCCCTTGATCCCGAGGCAACCGAGTTTGATCGGCTTCTGGCCGAGTTCGGCTTTCTCGA CGCGGATGACTTGCTCGTCGATGAGGACCGAATCACCTTTGCCGAGACCTGGCGTGGCAGCTGGGACTATACCACCGGCC CCCACAGCTTCCGGTTGGAGTTCATCCAGAGGGACAGCGACGAGGAGTTTGGGATTGGTGACGACCGGTTCGAGGACGCG GTGGAGCGCGAGCGCCGCGTCGTTGGGCGGTGGGGCTGGTCCTTCGGAGCGCGGACGGATGCCACGCTGCGGGGGGTCTA CCGCTGGATCGAGGGGCGAGATGTCGACGATCAGGAGCGCGAGAGCGAGGAGTACCGTCTTTCCTTGGGTCTTTCGCGCA GCCTGGGGCGGCGGACCTCGGGCGATTTGGATCTGATCCACCGGCAGCGCGTCGAGGGGCGTGAGGACCTCGCTTTGGAC GAGCGCCGTCGCGAGAACCGCATCAGTGCCCGCCTGACCATGGAATTCTAA
Upstream 100 bases:
>100_bases GGTCATGGAGGGCTGGGATACAGCGGTTACGGCTACGGCTACGGTTACGGTTACGGTAAATACGGTGGGGAGCCCCGGAG CAGCGCCGCCAAGGAAGCGG
Downstream 100 bases:
>100_bases GCCGCCTATGTATGAAGACTTCTACGGCCTGCGCGACAAGCCATTCGCGCTGAGCCCCGATCCACGTTTCTTCTACGCCA GCAAAGGCCACCGCCGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MAVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEESDLVTLLRPSLTLSGEGARA ELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIFVEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQG RFSEQEVRYVFDEARYHRSDRQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQRSLGLVHQAPRSTWRLSYAEG RTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITFAETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDA VERERRVVGRWGWSFGARTDATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD ERRRENRISARLTMEF
Sequences:
>Translated_496_residues MAVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEESDLVTLLRPSLTLSGEGARA ELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIFVEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQG RFSEQEVRYVFDEARYHRSDRQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQRSLGLVHQAPRSTWRLSYAEG RTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITFAETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDA VERERRVVGRWGWSFGARTDATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD ERRRENRISARLTMEF >Mature_495_residues AVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEESDLVTLLRPSLTLSGEGARAE LDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIFVEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQGR FSEQEVRYVFDEARYHRSDRQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSLR LSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQRSLGLVHQAPRSTWRLSYAEGR TDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITFAETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDAV ERERRVVGRWGWSFGARTDATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALDE RRRENRISARLTMEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57878; Mature: 57747
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEE CCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC SDLVTLLRPSLTLSGEGARAELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIF CCEEEEECCCEEECCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHE VEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQGRFSEQEVRYVFDEARYHRSD ECCHHHHHHHHHHHHCCCCCCCCHHHHEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCC RQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL CCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCEE RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQR EEEEECCCCEEEEECCCCCCCCEEECCCEEECCCCEECCCHHHHHHHCCCCCCCCCHHHH SLGLVHQAPRSTWRLSYAEGRTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITF HHCHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCEEE AETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDAVERERRVVGRWGWSFGARTD HHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC ATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD HHHHHHHHHHCCCCCCHHHHCCHHEEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHH ERRRENRISARLTMEF HHHHHCCCEEEEEECC >Mature Secondary Structure AVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEE CCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC SDLVTLLRPSLTLSGEGARAELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIF CCEEEEECCCEEECCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHE VEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQGRFSEQEVRYVFDEARYHRSD ECCHHHHHHHHHHHHCCCCCCCCHHHHEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCC RQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL CCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCEE RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQR EEEEECCCCEEEEECCCCCCCCEEECCCEEECCCCEECCCHHHHHHHCCCCCCCCCHHHH SLGLVHQAPRSTWRLSYAEGRTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITF HHCHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCEEE AETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDAVERERRVVGRWGWSFGARTD HHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC ATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD HHHHHHHHHHCCCCCCHHHHCCHHEEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHH ERRRENRISARLTMEF HHHHHCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA