| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998196
Identifier: 121998196
GI number: 121998196
Start: 1526295
End: 1527197
Strand: Reverse
Name: 121998196
Synonym: Hhal_1414
Alternate gene names: NA
Gene position: 1527197-1526295 (Counterclockwise)
Preceding gene: 121998197
Following gene: 121998193
Centisome position: 57.02
GC content: 70.76
Gene sequence:
>903_bases GTGCACAAGATCCTTTATGCCACCGACCTGAGCGAGCGGACGGAAGCTGCGGCGCAGCGCAGTGTGGAGCTGGCCCGGCG TCACAGCGCCGAGTTGCGGGCCGTGCACGTCATCGAAGCCGACCTCGAAGAAGAGACCCTCCGATTGCTGTTCCGTGAGC AGGGTGCCGGGGCGCAACAGGCGACCCGCGAACTGGAGCAGGCCGGCGAGGCGCGAATGACCGAGCAGCTCACTGCGATC GCCGGAGACGGGGCGGCCCCGAGCTGGACGGTCGGGTGTCGGTGGGGGCGTGGAGCCAGCGAGATCGCCGCAGAGGCCCG GGACTGGGGCGCCGATCTGGTGGCGATTGGCGCCCACGGTCGGCGCGTCGTCCGTGATCTGTTCCTGGGGGCGACCGCCG AGCGGCTGACCCACGAGTTGTCCGCGCCGATCCTGGTGGTCAAGCGTCCACCCCGGGGGGCGTACCAACGGGTCCTGGTG GCGGTGGACGGGTCGCCGCGCTCGCGCCGAGCCGTCGAGATGGCTGCCCGCCTGGCCCCCGATGCGCGACTGCACCTACT GAGCGTTCACGACACGACACCGCTGGAGCGGATCTATGGGGCCGGTGAGGGGGCCGCACAGGAGCTTCAGGCAGCCCTGC AGGCCGGACGGGAGCAGACGGCGGAGGAGCTGAGTCGGTTGGTGGCAGAGCTGCCGATGCGCGACCGTATCGCCCACTAT GAGGCACGCAGCGGGAATCCGGCGACGGTGATCGATCAGGTCGCGGGGGAGGCGGACATCGATCTGGTGGCGATGGGCAC CCGCGGCCTGTCACGCTGGCAGGGGGCGCTGCTGGGCAGCGTGGCCCGACGTGTCGCCCACGAGAGCGAGCGTGACCTCC TGCTCACCAGCGGTGAAGGGTGA
Upstream 100 bases:
>100_bases TGGGAGGGTGCACTGCGCGGTCGTGGCCAGGCCGCGGGGCGTCCGGTGACCGCCGTGGGGTATGCCGAACTGACTGGATA CGTCGACTAGGAGGGGTGTC
Downstream 100 bases:
>100_bases GGGCCGCACTGCTGATCAAGCGCTTGATCGGGCACAGAAGGTGTCGAGAAAGCGCTCCGGGGTGCGGCGCGGCCGGCGGG CGGCATAGTCGAAGAAGGCA
Product: UspA domain-containing protein
Products: NA
Alternate protein names: UspA Domain-Containing Protein; UspA Domain Protein; Universal Stress Family Protein; Universal Stress Protein Family; Universal Stress Protein UspA; UspA Protein; Stress Response Protein; Usp Universal Stress Protein; Universal Stress Protein UspA-Like Protein; Universal Stress Family
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MHKILYATDLSERTEAAAQRSVELARRHSAELRAVHVIEADLEEETLRLLFREQGAGAQQATRELEQAGEARMTEQLTAI AGDGAAPSWTVGCRWGRGASEIAAEARDWGADLVAIGAHGRRVVRDLFLGATAERLTHELSAPILVVKRPPRGAYQRVLV AVDGSPRSRRAVEMAARLAPDARLHLLSVHDTTPLERIYGAGEGAAQELQAALQAGREQTAEELSRLVAELPMRDRIAHY EARSGNPATVIDQVAGEADIDLVAMGTRGLSRWQGALLGSVARRVAHESERDLLLTSGEG
Sequences:
>Translated_300_residues MHKILYATDLSERTEAAAQRSVELARRHSAELRAVHVIEADLEEETLRLLFREQGAGAQQATRELEQAGEARMTEQLTAI AGDGAAPSWTVGCRWGRGASEIAAEARDWGADLVAIGAHGRRVVRDLFLGATAERLTHELSAPILVVKRPPRGAYQRVLV AVDGSPRSRRAVEMAARLAPDARLHLLSVHDTTPLERIYGAGEGAAQELQAALQAGREQTAEELSRLVAELPMRDRIAHY EARSGNPATVIDQVAGEADIDLVAMGTRGLSRWQGALLGSVARRVAHESERDLLLTSGEG >Mature_300_residues MHKILYATDLSERTEAAAQRSVELARRHSAELRAVHVIEADLEEETLRLLFREQGAGAQQATRELEQAGEARMTEQLTAI AGDGAAPSWTVGCRWGRGASEIAAEARDWGADLVAIGAHGRRVVRDLFLGATAERLTHELSAPILVVKRPPRGAYQRVLV AVDGSPRSRRAVEMAARLAPDARLHLLSVHDTTPLERIYGAGEGAAQELQAALQAGREQTAEELSRLVAELPMRDRIAHY EARSGNPATVIDQVAGEADIDLVAMGTRGLSRWQGALLGSVARRVAHESERDLLLTSGEG
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32458; Mature: 32458
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKILYATDLSERTEAAAQRSVELARRHSAELRAVHVIEADLEEETLRLLFREQGAGAQQ CCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEHHCHHHHHHHHHHHHCCCCHHH ATRELEQAGEARMTEQLTAIAGDGAAPSWTVGCRWGRGASEIAAEARDWGADLVAIGAHG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCH RRVVRDLFLGATAERLTHELSAPILVVKRPPRGAYQRVLVAVDGSPRSRRAVEMAARLAP HHHHHHHHHCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC DARLHLLSVHDTTPLERIYGAGEGAAQELQAALQAGREQTAEELSRLVAELPMRDRIAHY CCEEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH EARSGNPATVIDQVAGEADIDLVAMGTRGLSRWQGALLGSVARRVAHESERDLLLTSGEG HCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC >Mature Secondary Structure MHKILYATDLSERTEAAAQRSVELARRHSAELRAVHVIEADLEEETLRLLFREQGAGAQQ CCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEHHCHHHHHHHHHHHHCCCCHHH ATRELEQAGEARMTEQLTAIAGDGAAPSWTVGCRWGRGASEIAAEARDWGADLVAIGAHG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCH RRVVRDLFLGATAERLTHELSAPILVVKRPPRGAYQRVLVAVDGSPRSRRAVEMAARLAP HHHHHHHHHCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC DARLHLLSVHDTTPLERIYGAGEGAAQELQAALQAGREQTAEELSRLVAELPMRDRIAHY CCEEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH EARSGNPATVIDQVAGEADIDLVAMGTRGLSRWQGALLGSVARRVAHESERDLLLTSGEG HCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA