Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

Click here to switch to the map view.

The map label for this gene is 121998197

Identifier: 121998197

GI number: 121998197

Start: 1527208

End: 1528371

Strand: Reverse

Name: 121998197

Synonym: Hhal_1415

Alternate gene names: NA

Gene position: 1528371-1527208 (Counterclockwise)

Preceding gene: 121998198

Following gene: 121998196

Centisome position: 57.06

GC content: 67.7

Gene sequence:

>1164_bases
ATGGCTGAACGGATCGCCAGGCTGCGCCGGGCTGCGGCCTGTGTCCTGCTCGTTCTGGTTGCGGGGTGTATGGATCCACC
GGAGGGCGAGGACGCGGCCGAGCAACAGCGCATTACCGTGGCCGGGGCGCTCTCCGGCGAGCAGGATGCCGAGGGGTACG
CGCGGGCGCTCGGGCCGCGCCCCCTAGTCTTCCCAGAAGATCATGGCCCCCATCCCGCTTACCGCCACGAGTGGTGGTAC
ATCACCGGCAATCTGTTCGATGAGGATGGTCGCCACTTCGGGTTCCAGATCACCTTTTTCCGGTTCGCCCTGCGTCCCGA
GCCGAGTCCGCGGCCATCGGCGTGGGGGACCAACCAGCTCTGGATGGCCCACTTCGCGGTAACCGACACCGAGGGGGAGA
CCTACCACCACTTCGAGCGGCTGGCACGAGGAGCCCTCGGACTCGCCGGTGCCCAGCCCGATCCATTCCGGGTCTGGCTC
GAGGATTGGGAGGTACGCGGTACGCCGGGTGCCGGCCTGGCGCAGTTGCAGACCCGTCTGGAGGCCGGCGGCGTGGAATT
GGTGCTGGACCTTGAAGCCCGCAAGCCGATCGTCTTCCAGGGGGAAGACGGGTACAGCCAGAAGGGGGACGCCCCCGGGA
ACGCCTCCTATTACTACACCGTCCCGCGGCTTGGGGCCGAGGGGCGCGTGGTGGTGCCCGACGGCGAACACGCGGTCTCG
GGCACGGCCTGGATCGATCGCGAGTGGGGCAGCAGCACCCTGAGCGAGGAGCAGAGCGGGTGGGACTGGTTCTCTATTCA
ACTCGACGATGACCGCGAACTGATGTTCTACCACCTGCGCCGGGAGGATGGCAGCATCGACCCGAGGAGCAAGGGCGGAT
GGGTGGACGAGGACGGCCGCCATCGAGTCGTGACCCGCGACGATGTGACCCTGGAGGTGCTCGACCACTGGACCAGTCCG
GATGGTGAGGCCACCTATCCGGCGCGCTGGCGGCTAGACTACCCGGAAGAAGATCTGACGCTGGAGCTCGAACCGGTCCT
GGCCGATCAGGAGCTGCGCGACGGGTTCCGGTACTGGGAGGGTGCACTGCGCGGTCGTGGCCAGGCCGCGGGGCGTCCGG
TGACCGCCGTGGGGTATGCCGAACTGACTGGATACGTCGACTAG

Upstream 100 bases:

>100_bases
GGCCAGGCAGTTGCGTTGGCCACGGTGGCCGCCTTGCTCGCCGGGCTCTATCCGGCCTACCGTGCGGCCCGAGTCCCGCC
GGGGGAGGCGATGCGTGAGG

Downstream 100 bases:

>100_bases
GAGGGGTGTCGTGCACAAGATCCTTTATGCCACCGACCTGAGCGAGCGGACGGAAGCTGCGGCGCAGCGCAGTGTGGAGC
TGGCCCGGCGTCACAGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted Hydrolase; Hydrolase; Lipoprotein; ABC Transporter Type C Secreted Protein; Hydroxyneurosporene Synthase; ABC Transporter Lipoprotein; Secreted Hydrolase-Like; Twin-Arginine Translocation Pathway Signal; ABC-Type Transport System Hydrolase Component; Signal Peptide; Prefoldin Molecular Chaperone; Attachment Protein; Hydroxymethylglutaryl-Co A Reductase

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MAERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPRPLVFPEDHGPHPAYRHEWWY
ITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQLWMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWL
EDWEVRGTPGAGLAQLQTRLEAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS
GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGRHRVVTRDDVTLEVLDHWTSP
DGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWEGALRGRGQAAGRPVTAVGYAELTGYVD

Sequences:

>Translated_387_residues
MAERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPRPLVFPEDHGPHPAYRHEWWY
ITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQLWMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWL
EDWEVRGTPGAGLAQLQTRLEAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS
GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGRHRVVTRDDVTLEVLDHWTSP
DGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWEGALRGRGQAAGRPVTAVGYAELTGYVD
>Mature_386_residues
AERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPRPLVFPEDHGPHPAYRHEWWYI
TGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQLWMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWLE
DWEVRGTPGAGLAQLQTRLEAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVSG
TAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGRHRVVTRDDVTLEVLDHWTSPD
GEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWEGALRGRGQAAGRPVTAVGYAELTGYVD

Specific function: Unknown

COG id: COG5621

COG function: function code R; Predicted secreted hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43396; Mature: 43265

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPR
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCEEEEEEECCCCCCHHHHHHHCCCC
PLVFPEDHGPHPAYRHEWWYITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQL
CEECCCCCCCCCCCCCEEEEEECEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCE
WMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWLEDWEVRGTPGAGLAQLQTRL
EEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCHHHHHHHH
EAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS
HCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCC
GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGR
CCEEEECCCCCCHHHHCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
HRVVTRDDVTLEVLDHWTSPDGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWE
EEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHH
GALRGRGQAAGRPVTAVGYAELTGYVD
HHHCCCCCCCCCCEEEEEHEECCCCCC
>Mature Secondary Structure 
AERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCEEEEEEECCCCCCHHHHHHHCCCC
PLVFPEDHGPHPAYRHEWWYITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQL
CEECCCCCCCCCCCCCEEEEEECEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCE
WMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWLEDWEVRGTPGAGLAQLQTRL
EEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCHHHHHHHH
EAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS
HCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCC
GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGR
CCEEEECCCCCCHHHHCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
HRVVTRDDVTLEVLDHWTSPDGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWE
EEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHH
GALRGRGQAAGRPVTAVGYAELTGYVD
HHHCCCCCCCCCCEEEEEHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA