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The map label for this gene is yjiR [H]

Identifier: 121997858

GI number: 121997858

Start: 1159009

End: 1160445

Strand: Reverse

Name: yjiR [H]

Synonym: Hhal_1067

Alternate gene names: 121997858

Gene position: 1160445-1159009 (Counterclockwise)

Preceding gene: 121997861

Following gene: 121997857

Centisome position: 43.33

GC content: 71.47

Gene sequence:

>1437_bases
ATGACTACACCACTCTACGAACGGGTGGCCGAGACGCTGGCTCATCAGATCGAGCAGGGCGTCTACGCGCCCGGGGATCG
TCTGCCCGGACTGCGGCGTCTGCGCCGGCACTTCGGGGTGAGCATGGCCACCATCGTCGCCGCCTGCGAACTCCTTGAGC
AGCGCGAGGTCCTCGAGGCCCGACCCCGCTCGGGGTTCTTCGTCCGCGAACGGGCGACAGCGAGCGCAGCCCCCAGCGAG
CAAGTGGACGAGGTGGATGCGCCGAGTCTGGTGCTCGGCCAGGAGCGCGTCCTCGACCTGGTGCGCGCCCACCACGAGCC
GGATGTGGTCTCGCTGGGGGCGGCCGCAGCGCCGGCGGCGTTCCTCCCGGCCGCGGCCATGGACCGCAGCTTCGCCCGGG
TGCGTCGCCGCCAGCGCGAGCGGGTCAATGCCTACGACTTCCCGCCGGGGTGTGCCGAGCTGCGCACCCAGATCGCCCGC
CGCATGGCCTACGCCGGCTGCAGCCTGTCTCCGGACGACATCGTGCTCACCGCCGGGTGCCAGGAAGCGATCACCCTGAG
CCTGCGCGCCGTGGCCGAGCCCGGCGACGTGGTGGCCATCGAGTCGCCGACCTTCTACGGCATCCTTCAGGCCATCGAGT
CCCAGGGCATGCAGGCCCTGGAGGTGGCCACGGACCCGCATTCCGGGATGATCCCCGAGGCGCTGGAACGGGCCCTGTCG
CGTTGGTCGATCCGCGCCTGTGTGCTGATGCCCACCTTCGGCAATCCGTTGGGGCACGCCACCCCGGAGTCGCGCAAGCA
GGAGCTGGTGGGGGTGCTCAGCGCCCACGGCGTGCCCTTAATCGAGGACGATGTCTACGGTGAGCTGGCCTTCGACGGTA
CCCGGCCGTGGGCAGCGAAGGCCTTCGACGCCCACGGCGAGGTGCTCTACTGCAGTTCCTTTTCCAAGGTCCTCGGTGCC
GGGCTGCGGGTCGGCTGGGTCGCGCCGGGCCGTTACCGGGACCGCCTGGTCTATCTCAAGTACGCGACCAGTCAGGCCAC
TTGTACCCTGAGTTCGTTGGCGGTGGCCGACTACCTGGAGCAGGGCGGCTACGACCGCTTCCTGCGCCGGGCCCGGCGCA
ACTACGAGCGGCATGTGCGCTGGGTGGCCGGCCTGGTACGCCGCCACTTCCCGGAGGGCACCCGGGTGACGCGGCCGCGG
GGCGGTTTCGTGGTGTGGGTGGAGCTCCCGGCCGGCTGCGATAGCCTGGAGCTGCAGCGCCGCGCCCTGGCCGAGGGAAT
CAGCATCGCCCCCGGTCCCGTCTTCTCGCCCACCGGCCGGTACGGACGCTGCCTGCGGCTCAACTGCGCCCAGGCCGACG
TGCCGGCGACAGAGTGGGCGCTGCAGCGGCTCGGCGCCCTGGCCATCGGCGAGGATCGCGGCGACGTGCGCGGCTGA

Upstream 100 bases:

>100_bases
CTTCTCGGGATCGACGACTATCATCACTGTAATCGACGGCCCGATACAGAAGCAGTTTCCGACATTATGAACCGGTACAG
TTGCGGTAGACTGGGTCCCC

Downstream 100 bases:

>100_bases
GCCGGGCCCAGGCCCTTGGCCGGGGCGGTCGGCCTCGGCTACCGTGTGCCGCCATGGAACAGCTGCAGACGCTCCTCCAG
CGCCTCGACGGTCGAGGCTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MTTPLYERVAETLAHQIEQGVYAPGDRLPGLRRLRRHFGVSMATIVAACELLEQREVLEARPRSGFFVRERATASAAPSE
QVDEVDAPSLVLGQERVLDLVRAHHEPDVVSLGAAAAPAAFLPAAAMDRSFARVRRRQRERVNAYDFPPGCAELRTQIAR
RMAYAGCSLSPDDIVLTAGCQEAITLSLRAVAEPGDVVAIESPTFYGILQAIESQGMQALEVATDPHSGMIPEALERALS
RWSIRACVLMPTFGNPLGHATPESRKQELVGVLSAHGVPLIEDDVYGELAFDGTRPWAAKAFDAHGEVLYCSSFSKVLGA
GLRVGWVAPGRYRDRLVYLKYATSQATCTLSSLAVADYLEQGGYDRFLRRARRNYERHVRWVAGLVRRHFPEGTRVTRPR
GGFVVWVELPAGCDSLELQRRALAEGISIAPGPVFSPTGRYGRCLRLNCAQADVPATEWALQRLGALAIGEDRGDVRG

Sequences:

>Translated_478_residues
MTTPLYERVAETLAHQIEQGVYAPGDRLPGLRRLRRHFGVSMATIVAACELLEQREVLEARPRSGFFVRERATASAAPSE
QVDEVDAPSLVLGQERVLDLVRAHHEPDVVSLGAAAAPAAFLPAAAMDRSFARVRRRQRERVNAYDFPPGCAELRTQIAR
RMAYAGCSLSPDDIVLTAGCQEAITLSLRAVAEPGDVVAIESPTFYGILQAIESQGMQALEVATDPHSGMIPEALERALS
RWSIRACVLMPTFGNPLGHATPESRKQELVGVLSAHGVPLIEDDVYGELAFDGTRPWAAKAFDAHGEVLYCSSFSKVLGA
GLRVGWVAPGRYRDRLVYLKYATSQATCTLSSLAVADYLEQGGYDRFLRRARRNYERHVRWVAGLVRRHFPEGTRVTRPR
GGFVVWVELPAGCDSLELQRRALAEGISIAPGPVFSPTGRYGRCLRLNCAQADVPATEWALQRLGALAIGEDRGDVRG
>Mature_477_residues
TTPLYERVAETLAHQIEQGVYAPGDRLPGLRRLRRHFGVSMATIVAACELLEQREVLEARPRSGFFVRERATASAAPSEQ
VDEVDAPSLVLGQERVLDLVRAHHEPDVVSLGAAAAPAAFLPAAAMDRSFARVRRRQRERVNAYDFPPGCAELRTQIARR
MAYAGCSLSPDDIVLTAGCQEAITLSLRAVAEPGDVVAIESPTFYGILQAIESQGMQALEVATDPHSGMIPEALERALSR
WSIRACVLMPTFGNPLGHATPESRKQELVGVLSAHGVPLIEDDVYGELAFDGTRPWAAKAFDAHGEVLYCSSFSKVLGAG
LRVGWVAPGRYRDRLVYLKYATSQATCTLSSLAVADYLEQGGYDRFLRRARRNYERHVRWVAGLVRRHFPEGTRVTRPRG
GFVVWVELPAGCDSLELQRRALAEGISIAPGPVFSPTGRYGRCLRLNCAQADVPATEWALQRLGALAIGEDRGDVRG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=287, Percent_Identity=25.4355400696864, Blast_Score=116, Evalue=6e-26,
Organism=Homo sapiens, GI33469970, Length=287, Percent_Identity=25.4355400696864, Blast_Score=116, Evalue=6e-26,
Organism=Homo sapiens, GI4507369, Length=197, Percent_Identity=25.3807106598985, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI1790797, Length=460, Percent_Identity=38.695652173913, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1787710, Length=464, Percent_Identity=41.3793103448276, Blast_Score=328, Evalue=7e-91,
Organism=Saccharomyces cerevisiae, GI6321000, Length=301, Percent_Identity=22.5913621262458, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21356535, Length=367, Percent_Identity=22.6158038147139, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI18859735, Length=291, Percent_Identity=23.7113402061856, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52310; Mature: 52179

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPLYERVAETLAHQIEQGVYAPGDRLPGLRRLRRHFGVSMATIVAACELLEQREVLEA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
RPRSGFFVRERATASAAPSEQVDEVDAPSLVLGQERVLDLVRAHHEPDVVSLGAAAAPAA
CCCCCEEEEECCCCCCCCCHHHHCCCCCCHHHCHHHHHHHHHHCCCCCEEECCCCCCCHH
FLPAAAMDRSFARVRRRQRERVNAYDFPPGCAELRTQIARRMAYAGCSLSPDDIVLTAGC
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
QEAITLSLRAVAEPGDVVAIESPTFYGILQAIESQGMQALEVATDPHSGMIPEALERALS
HHHHHHHHHEECCCCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
RWSIRACVLMPTFGNPLGHATPESRKQELVGVLSAHGVPLIEDDVYGELAFDGTRPWAAK
HHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCEEEECCCCCCHHH
AFDAHGEVLYCSSFSKVLGAGLRVGWVAPGRYRDRLVYLKYATSQATCTLSSLAVADYLE
HHCCCCCEEEECCHHHHHHCCCEEEEECCCCHHCEEEEEEEECCCCHHHHHHHHHHHHHH
QGGYDRFLRRARRNYERHVRWVAGLVRRHFPEGTRVTRPRGGFVVWVELPAGCDSLELQR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHH
RALAEGISIAPGPVFSPTGRYGRCLRLNCAQADVPATEWALQRLGALAIGEDRGDVRG
HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEECCCCCCCCC
>Mature Secondary Structure 
TTPLYERVAETLAHQIEQGVYAPGDRLPGLRRLRRHFGVSMATIVAACELLEQREVLEA
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
RPRSGFFVRERATASAAPSEQVDEVDAPSLVLGQERVLDLVRAHHEPDVVSLGAAAAPAA
CCCCCEEEEECCCCCCCCCHHHHCCCCCCHHHCHHHHHHHHHHCCCCCEEECCCCCCCHH
FLPAAAMDRSFARVRRRQRERVNAYDFPPGCAELRTQIARRMAYAGCSLSPDDIVLTAGC
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
QEAITLSLRAVAEPGDVVAIESPTFYGILQAIESQGMQALEVATDPHSGMIPEALERALS
HHHHHHHHHEECCCCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
RWSIRACVLMPTFGNPLGHATPESRKQELVGVLSAHGVPLIEDDVYGELAFDGTRPWAAK
HHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCEEEECCCCCCHHH
AFDAHGEVLYCSSFSKVLGAGLRVGWVAPGRYRDRLVYLKYATSQATCTLSSLAVADYLE
HHCCCCCEEEECCHHHHHHCCCEEEEECCCCHHCEEEEEEEECCCCHHHHHHHHHHHHHH
QGGYDRFLRRARRNYERHVRWVAGLVRRHFPEGTRVTRPRGGFVVWVELPAGCDSLELQR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHH
RALAEGISIAPGPVFSPTGRYGRCLRLNCAQADVPATEWALQRLGALAIGEDRGDVRG
HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]