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The map label for this gene is intR [C]

Identifier: 121997541

GI number: 121997541

Start: 833369

End: 834523

Strand: Reverse

Name: intR [C]

Synonym: Hhal_0746

Alternate gene names: 121997541

Gene position: 834523-833369 (Counterclockwise)

Preceding gene: 121997557

Following gene: 121997538

Centisome position: 31.16

GC content: 66.93

Gene sequence:

>1155_bases
ATGGCGAGTTTCTGTGTCCGCCCCAATGGGGTGCTGCAGTACGATCTGTGTCTGTACGGAAGGCGCTTCCGCGAGACCTC
CGGGCTGCGCGATACGCCCGAGAATCGCCGGCGGATCCGGCGTGATCTGCGGCGGATCAACGCCGAGATCGAGATGGGGA
CGTTCGATTATGCGGCCTGGTTCCCCAACAGCCGCAAGCTGGCCGAGGCGCAGCGCTGGCTGCGCGAGCAGGGCTCGCGA
GCGCCGGATCAGCGCTTCGGCCCCTACGCGTGGCAGTGGTATCAGCTCCACCTCGGGGACTGGAAGGAGAGCTACGCGCG
GCGGGTGTGCGGTGTTCTGGAGGGCTATCTGATTCCGCACTTCGGCGAGTGGCCGTTGGATCAGATCACCGAGCGCGCGG
TCCGCGCCTTTCGGCACGAACTCCTGGAGCTCACCAACGCCCGCGGCGAGCGTCGGCTGAGCAACGCCCGTATCAACTTC
ATCCTCACGCCCCTCGCCGGCGTGATGCGCTTCGCCGAAAGCGAACTCGGGATCGAGCACCCCATGCGCCAAATCCGGCC
CCTGCGCGACGATCGCGACGATCCCATGCCGCTGACCGCGGAGCAGGTCCACGCCTTCCTCGCCGCCGTCGATCCGGATT
ACTACCTCTACTTTAAGCTGCGTTTCTATACCGGGTTGCGCAGCTGCGAGGTCGACGGCCTGAAGGTGTGCTACGTGGAC
CTGGAGCGCCGGCAGCTGCGGGTTCGCGAGGCCCGGGTCGATGGGCGGCAGACGACCCTCAAGCACCGCAAGACCCGGCG
GGATATCCCCTTGTCGCCGGGGTTGGCGGCGGAGCTGGATCGGCACATTCGGGGTCGGCAGGGTGACGACTACGTCTTTA
CGCGCTCGGACGGGCGGCCGCTTCACCCGAGCTGGGTGGCCGAGCAGGTCTGGAAGCCTACCCTCAAGGCCCTCGGTCTG
GCCCCGCGACGGGTCTACCAGACCCGCCATACGGCCGCCGTGCTCCACCTGGCTGCCGGCGAGAATCCGTTATTCGTCTC
CCGGCTGCTTGGCCACTCCTCGACGAAGATGCTCTTCGAGCGCTACGCCCCCTTCGTGGCGAATGCCCTGGGCGACGACG
GTTCCGCGTTCGAGGCGATGATGGCGAGCCAATAG

Upstream 100 bases:

>100_bases
GATCCGCGAAGCAAGTGCTCCCGTCAGCCAGTGGTGGACGTAGACCGCCCGTTCGGGCGTACGATTGATCATCGTCTCCA
GGGAAGGAGAGGTGAAGGTC

Downstream 100 bases:

>100_bases
TGCGGCAATCCTGCCTCGGCGCGCAGCACCTGCAGGCGGAGTGCTGCGGGGTTCATGGGGGTTCGCTTGTTCAGGCGACA
AGGGAGCGATAGCTGCGCTC

Product: phage integrase family protein

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase Family Protein; Integrase; Phage Integrase Family Site Specific Recombinase; Lambdoid Prophage Rac Integrase; Bacteriophage P4 Integrase; Phage Integrase Protein; Site-Specific Recombinase; Transposase; Int Protein; Pore-Forming Cytotoxin Integrase; Prophage Integrase

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MASFCVRPNGVLQYDLCLYGRRFRETSGLRDTPENRRRIRRDLRRINAEIEMGTFDYAAWFPNSRKLAEAQRWLREQGSR
APDQRFGPYAWQWYQLHLGDWKESYARRVCGVLEGYLIPHFGEWPLDQITERAVRAFRHELLELTNARGERRLSNARINF
ILTPLAGVMRFAESELGIEHPMRQIRPLRDDRDDPMPLTAEQVHAFLAAVDPDYYLYFKLRFYTGLRSCEVDGLKVCYVD
LERRQLRVREARVDGRQTTLKHRKTRRDIPLSPGLAAELDRHIRGRQGDDYVFTRSDGRPLHPSWVAEQVWKPTLKALGL
APRRVYQTRHTAAVLHLAAGENPLFVSRLLGHSSTKMLFERYAPFVANALGDDGSAFEAMMASQ

Sequences:

>Translated_384_residues
MASFCVRPNGVLQYDLCLYGRRFRETSGLRDTPENRRRIRRDLRRINAEIEMGTFDYAAWFPNSRKLAEAQRWLREQGSR
APDQRFGPYAWQWYQLHLGDWKESYARRVCGVLEGYLIPHFGEWPLDQITERAVRAFRHELLELTNARGERRLSNARINF
ILTPLAGVMRFAESELGIEHPMRQIRPLRDDRDDPMPLTAEQVHAFLAAVDPDYYLYFKLRFYTGLRSCEVDGLKVCYVD
LERRQLRVREARVDGRQTTLKHRKTRRDIPLSPGLAAELDRHIRGRQGDDYVFTRSDGRPLHPSWVAEQVWKPTLKALGL
APRRVYQTRHTAAVLHLAAGENPLFVSRLLGHSSTKMLFERYAPFVANALGDDGSAFEAMMASQ
>Mature_383_residues
ASFCVRPNGVLQYDLCLYGRRFRETSGLRDTPENRRRIRRDLRRINAEIEMGTFDYAAWFPNSRKLAEAQRWLREQGSRA
PDQRFGPYAWQWYQLHLGDWKESYARRVCGVLEGYLIPHFGEWPLDQITERAVRAFRHELLELTNARGERRLSNARINFI
LTPLAGVMRFAESELGIEHPMRQIRPLRDDRDDPMPLTAEQVHAFLAAVDPDYYLYFKLRFYTGLRSCEVDGLKVCYVDL
ERRQLRVREARVDGRQTTLKHRKTRRDIPLSPGLAAELDRHIRGRQGDDYVFTRSDGRPLHPSWVAEQVWKPTLKALGLA
PRRVYQTRHTAAVLHLAAGENPLFVSRLLGHSSTKMLFERYAPFVANALGDDGSAFEAMMASQ

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44689; Mature: 44557

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFCVRPNGVLQYDLCLYGRRFRETSGLRDTPENRRRIRRDLRRINAEIEMGTFDYAAW
CCCCEECCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEECCEEHHHC
FPNSRKLAEAQRWLREQGSRAPDQRFGPYAWQWYQLHLGDWKESYARRVCGVLEGYLIPH
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
FGEWPLDQITERAVRAFRHELLELTNARGERRLSNARINFILTPLAGVMRFAESELGIEH
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEEHHHHHHHHHHHHHCCHHH
PMRQIRPLRDDRDDPMPLTAEQVHAFLAAVDPDYYLYFKLRFYTGLRSCEVDGLKVCYVD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEHHCCCCCCCCCEEEEEEE
LERRQLRVREARVDGRQTTLKHRKTRRDIPLSPGLAAELDRHIRGRQGDDYVFTRSDGRP
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC
LHPSWVAEQVWKPTLKALGLAPRRVYQTRHTAAVLHLAAGENPLFVSRLLGHSSTKMLFE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCHHHHHHH
RYAPFVANALGDDGSAFEAMMASQ
HHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure 
ASFCVRPNGVLQYDLCLYGRRFRETSGLRDTPENRRRIRRDLRRINAEIEMGTFDYAAW
CCCEECCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEECCEEHHHC
FPNSRKLAEAQRWLREQGSRAPDQRFGPYAWQWYQLHLGDWKESYARRVCGVLEGYLIPH
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
FGEWPLDQITERAVRAFRHELLELTNARGERRLSNARINFILTPLAGVMRFAESELGIEH
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEEHHHHHHHHHHHHHCCHHH
PMRQIRPLRDDRDDPMPLTAEQVHAFLAAVDPDYYLYFKLRFYTGLRSCEVDGLKVCYVD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEHHCCCCCCCCCEEEEEEE
LERRQLRVREARVDGRQTTLKHRKTRRDIPLSPGLAAELDRHIRGRQGDDYVFTRSDGRP
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC
LHPSWVAEQVWKPTLKALGLAPRRVYQTRHTAAVLHLAAGENPLFVSRLLGHSSTKMLFE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCHHHHHHH
RYAPFVANALGDDGSAFEAMMASQ
HHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA