| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997538
Identifier: 121997538
GI number: 121997538
Start: 830613
End: 831851
Strand: Reverse
Name: 121997538
Synonym: Hhal_0742
Alternate gene names: NA
Gene position: 831851-830613 (Counterclockwise)
Preceding gene: 121997541
Following gene: 121997537
Centisome position: 31.06
GC content: 69.98
Gene sequence:
>1239_bases ATGGATTACCACCACCTCGACACCCTGCGCCGTCACCACCCGGCCTGGCGGCTGCTCGCTGCCGATAGCGCGCCGCTGGT GCTCGGCTTCCTGCATCGTGCCTTCGTCGAGCCCAATTGCCGGGCGCGCGCCCAGGGGGAGCTGACCAACGCCCTGGAGG ACTACCTGCACGGCCTGCGCGAGGAGTTGGGCGAGGCGGTCTATCCACGCTCGGCGGCGGAGTATCTCAATGACTGGGCG GCGGACGAACGGGGCTGGCTGCGCAAGTTCTACCCGCCGAATACCGACGAGCCGCACTTCGATCTGACCCCGGCGACGGA GACGGCGCTCGGCTGGCTCGACGAGCTCCAGGAGCGGCAGTTCGTGGGGGCGGAGTCGCGGCTGATGACGGTCTTCGATC TGCTCCGTCAGGTGGTCCAGGGGGCGGAGACCGACCCCGAGGCGCGGATCGAGGCCCTGGAGCGCCGGCGTGCCGAGATC GACGCCGAGATTGCCGCCATCCGCGATGGGCAGCTGGCGCTGCTGGACGAGACGCAGATCAAGGAGCGCTTCTACCAGGT GGAGCGCACGGCCCGCGGGCTGCTCTCCGACTTCCGGCAGGTGGAGCAGAACTTCCGTGAACTCGACCGCCAGGTGCGCG AGCGCATCACCACCTGGGGCGGCAGCAAGGGGGCGCTGCTCGGTGAGGTCTTCGGGGAGGCCGACGCCATCGCCGACTCG GACCAGGGCAAGAGCTTCCGGGCCTTCTGGGGGTTTCTCATGTCGCCGGCGCGTCAGGAGGAGCTCACCGATCTGCTCGA GCGCGTCCTGGAACTCGAACCGGTCCAGACCCTGGGGCCGGACCGCCGGCTGGCGCGCATCCACCACGACTGGTTGGATG CCGGCGAGGAGACCCAGCGCACCGTCTCGCGGCTGTCGGCGCAGCTGCGCAAGTTCCTCGATGACCAGGCCTGGCTGGAG AACCGCCGCATCATGGACCTGATCCAGGGGGTGGAGCAGCACGCCCTGGCCGTGCGCGATCACCCGCCTGGAGGATCGGA TCGCCCAGCTCGACCGGACCTACGGCGAGCAGCAGGGCCAGCGCGACGAGCTCAAGCAGGCCATCGCCGACAATGGCGGG GATCGCCTGGAGCGGCTCAAGGCGGAGATCGCCCGCAAGAGCGAGGAGAAGGAGCGGCGCAGCGCCAGTGCCCGCACCTA CAACGAGCTGGCCCGCGCCCTGGGGCTGCCGCTGGCTGA
Upstream 100 bases:
>100_bases ATCGCGGGTGCCGGCGAGTGGGTCGGCCCGTTGACGGCCGCCGCCGTTTCCGGTTCCCGTACCGGATCACCTTGGGGCAG GATCAGCGAGCGAGCCGAGC
Downstream 100 bases:
>100_bases GTCGGCGGAGGTCTTCCGCGCCAACCAGCAGGCAGCGGCCGGCGAGCGCGAGGCCGCCGAAGAGGCGCTGACCCGGCTCC AGAACCAGCAAACCGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MDYHHLDTLRRHHPAWRLLAADSAPLVLGFLHRAFVEPNCRARAQGELTNALEDYLHGLREELGEAVYPRSAAEYLNDWA ADERGWLRKFYPPNTDEPHFDLTPATETALGWLDELQERQFVGAESRLMTVFDLLRQVVQGAETDPEARIEALERRRAEI DAEIAAIRDGQLALLDETQIKERFYQVERTARGLLSDFRQVEQNFRELDRQVRERITTWGGSKGALLGEVFGEADAIADS DQGKSFRAFWGFLMSPARQEELTDLLERVLELEPVQTLGPDRRLARIHHDWLDAGEETQRTVSRLSAQLRKFLDDQAWLE NRRIMDLIQGVEQHALAVRDHPPGGSDRPARPDLRRAAGPARRAQAGHRRQWRGSPGAAQGGDRPQERGEGAAQRQCPHL QRAGPRPGAAAG
Sequences:
>Translated_412_residues MDYHHLDTLRRHHPAWRLLAADSAPLVLGFLHRAFVEPNCRARAQGELTNALEDYLHGLREELGEAVYPRSAAEYLNDWA ADERGWLRKFYPPNTDEPHFDLTPATETALGWLDELQERQFVGAESRLMTVFDLLRQVVQGAETDPEARIEALERRRAEI DAEIAAIRDGQLALLDETQIKERFYQVERTARGLLSDFRQVEQNFRELDRQVRERITTWGGSKGALLGEVFGEADAIADS DQGKSFRAFWGFLMSPARQEELTDLLERVLELEPVQTLGPDRRLARIHHDWLDAGEETQRTVSRLSAQLRKFLDDQAWLE NRRIMDLIQGVEQHALAVRDHPPGGSDRPARPDLRRAAGPARRAQAGHRRQWRGSPGAAQGGDRPQERGEGAAQRQCPHL QRAGPRPGAAAG >Mature_412_residues MDYHHLDTLRRHHPAWRLLAADSAPLVLGFLHRAFVEPNCRARAQGELTNALEDYLHGLREELGEAVYPRSAAEYLNDWA ADERGWLRKFYPPNTDEPHFDLTPATETALGWLDELQERQFVGAESRLMTVFDLLRQVVQGAETDPEARIEALERRRAEI DAEIAAIRDGQLALLDETQIKERFYQVERTARGLLSDFRQVEQNFRELDRQVRERITTWGGSKGALLGEVFGEADAIADS DQGKSFRAFWGFLMSPARQEELTDLLERVLELEPVQTLGPDRRLARIHHDWLDAGEETQRTVSRLSAQLRKFLDDQAWLE NRRIMDLIQGVEQHALAVRDHPPGGSDRPARPDLRRAAGPARRAQAGHRRQWRGSPGAAQGGDRPQERGEGAAQRQCPHL QRAGPRPGAAAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46729; Mature: 46729
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYHHLDTLRRHHPAWRLLAADSAPLVLGFLHRAFVEPNCRARAQGELTNALEDYLHGLR CCCHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH EELGEAVYPRSAAEYLNDWAADERGWLRKFYPPNTDEPHFDLTPATETALGWLDELQERQ HHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH FVGAESRLMTVFDLLRQVVQGAETDPEARIEALERRRAEIDAEIAAIRDGQLALLDETQI HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH KERFYQVERTARGLLSDFRQVEQNFRELDRQVRERITTWGGSKGALLGEVFGEADAIADS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC DQGKSFRAFWGFLMSPARQEELTDLLERVLELEPVQTLGPDRRLARIHHDWLDAGEETQR CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCHHHHH TVSRLSAQLRKFLDDQAWLENRRIMDLIQGVEQHALAVRDHPPGGSDRPARPDLRRAAGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCH ARRAQAGHRRQWRGSPGAAQGGDRPQERGEGAAQRQCPHLQRAGPRPGAAAG HHHHHHCCCHHCCCCCCCCCCCCCCHHHCCCCHHHCCCCHHHCCCCCCCCCC >Mature Secondary Structure MDYHHLDTLRRHHPAWRLLAADSAPLVLGFLHRAFVEPNCRARAQGELTNALEDYLHGLR CCCHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH EELGEAVYPRSAAEYLNDWAADERGWLRKFYPPNTDEPHFDLTPATETALGWLDELQERQ HHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH FVGAESRLMTVFDLLRQVVQGAETDPEARIEALERRRAEIDAEIAAIRDGQLALLDETQI HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH KERFYQVERTARGLLSDFRQVEQNFRELDRQVRERITTWGGSKGALLGEVFGEADAIADS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC DQGKSFRAFWGFLMSPARQEELTDLLERVLELEPVQTLGPDRRLARIHHDWLDAGEETQR CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCHHHHH TVSRLSAQLRKFLDDQAWLENRRIMDLIQGVEQHALAVRDHPPGGSDRPARPDLRRAAGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCH ARRAQAGHRRQWRGSPGAAQGGDRPQERGEGAAQRQCPHLQRAGPRPGAAAG HHHHHHCCCHHCCCCCCCCCCCCCCHHHCCCCHHHCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA