Click here to switch to the map view.

The map label for this gene is ybfL [H]

Identifier: 121611781

GI number: 121611781

Start: 5399316

End: 5400152

Strand: Direct

Name: ybfL [H]

Synonym: Veis_4881

Alternate gene names: 121611781

Gene position: 5399316-5400152 (Clockwise)

Preceding gene: 121611777

Following gene: 121611782

Centisome position: 96.99

GC content: 61.41

Gene sequence:

>837_bases
GTGGGCGGCCTGGTCATCGCCATCGATGGCAAGAGTCTGCGCGGGGCGGCATGTCCGGCCTGCGGGTTGCGCGCGCTGCA
TCAGGTATCGGCCTACGCCGCCGAATATGGCCTGACGCTGGGGCCATTGGCCTGCCAAGAAAAGTCCAACGAAATCACGG
CCATTGGCGAGTTGCTGCCAACGCTGGCGCTCGAGGGAGCGGTTGTCACCATCGATGCCATCGGCTGCCAGAGCGCGATT
GCCGAGCAGATCGTAGGCGGTGGTGGCGATTACGTGCTTGCCGTCAAGGACAACCAACCACATCTGGCCCACGCCTTGCG
CGACTTCTTTGGCACGCTCGATGCGCCCGGCGACCCGGTCAGACAGACCTGCGTGCATGAAACGCTGGACAAGGGCCATG
GCCGCATTGAAACCCGTCGCTGCACGGCGGTGGGCGATCTGGATTGGCTAGCTACCCTGGGGCTCAAGGAACACTGGAAG
AAGATCACTTCGGTGGCCGGTATCGACTCCAGCCGCGTGATCGGCAGCAAGACCGAGACTGATCGGCGCTATGTGATCAG
TTCATTGCCCGCCGACAGTGAGCGCATTTTGCACGCTGTGCGCATGCACTGGGGCATTGAAAATGGCTTGCACTGGTGCC
TGGATGTGACCTTTGGAGAGGACGCCTGCCCCATCCGGCTACGCAATGCTGCACTCGACTTCTCATTGCTGCGCCGTGCC
GCCATGAACCTGTTTCGTGCTGACCACTCTCGCGCCATGAGCCTGCCAAAAAAACGCAAGGCCGCTGCCTGGAACCCGGA
CTACCTCGCCAATATCCTTCATCTGCGGGAAATTTGA

Upstream 100 bases:

>100_bases
GCATCAAAGCACGACACCATCCGTCGGGTATTTGAGGCGCTCTCGCCAAGTCAGTTGTCGGCCTGCTTGAGTTCCTGGAT
GGCGCCAAGTCTGCCCTGCG

Downstream 100 bases:

>100_bases
TGCTCCGGCCCTGATGGGTAAACCCCCGGGCTGGCATATCTGCGGCCATCGGGCTAGACTGCGCGACCGTTGAGGACAAC
TGCCATGAACGTCATTGACT

Product: transposase, IS4 family protein

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MGGLVIAIDGKSLRGAACPACGLRALHQVSAYAAEYGLTLGPLACQEKSNEITAIGELLPTLALEGAVVTIDAIGCQSAI
AEQIVGGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPVRQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKEHWK
KITSVAGIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMHWGIENGLHWCLDVTFGEDACPIRLRNAALDFSLLRRA
AMNLFRADHSRAMSLPKKRKAAAWNPDYLANILHLREI

Sequences:

>Translated_278_residues
MGGLVIAIDGKSLRGAACPACGLRALHQVSAYAAEYGLTLGPLACQEKSNEITAIGELLPTLALEGAVVTIDAIGCQSAI
AEQIVGGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPVRQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKEHWK
KITSVAGIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMHWGIENGLHWCLDVTFGEDACPIRLRNAALDFSLLRRA
AMNLFRADHSRAMSLPKKRKAAAWNPDYLANILHLREI
>Mature_277_residues
GGLVIAIDGKSLRGAACPACGLRALHQVSAYAAEYGLTLGPLACQEKSNEITAIGELLPTLALEGAVVTIDAIGCQSAIA
EQIVGGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPVRQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKEHWKK
ITSVAGIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMHWGIENGLHWCLDVTFGEDACPIRLRNAALDFSLLRRAA
MNLFRADHSRAMSLPKKRKAAAWNPDYLANILHLREI

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=273, Percent_Identity=39.1941391941392, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789896, Length=273, Percent_Identity=38.8278388278388, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786924, Length=135, Percent_Identity=42.2222222222222, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 30118; Mature: 29987

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGLVIAIDGKSLRGAACPACGLRALHQVSAYAAEYGLTLGPLACQEKSNEITAIGELLP
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEECCHHHCCCCCCHHHHHHHHH
TLALEGAVVTIDAIGCQSAIAEQIVGGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPV
HHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHH
RQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKEHWKKITSVAGIDSSRVIGSKTET
HHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
DRRYVISSLPADSERILHAVRMHWGIENGLHWCLDVTFGEDACPIRLRNAALDFSLLRRA
CHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHH
AMNLFRADHSRAMSLPKKRKAAAWNPDYLANILHLREI
HHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
GGLVIAIDGKSLRGAACPACGLRALHQVSAYAAEYGLTLGPLACQEKSNEITAIGELLP
CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEECCHHHCCCCCCHHHHHHHHH
TLALEGAVVTIDAIGCQSAIAEQIVGGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPV
HHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHH
RQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKEHWKKITSVAGIDSSRVIGSKTET
HHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
DRRYVISSLPADSERILHAVRMHWGIENGLHWCLDVTFGEDACPIRLRNAALDFSLLRRA
CHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHH
AMNLFRADHSRAMSLPKKRKAAAWNPDYLANILHLREI
HHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]