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The map label for this gene is amyD [H]

Identifier: 121611457

GI number: 121611457

Start: 5031390

End: 5032283

Strand: Direct

Name: amyD [H]

Synonym: Veis_4548

Alternate gene names: 121611457

Gene position: 5031390-5032283 (Clockwise)

Preceding gene: 121611456

Following gene: 121611458

Centisome position: 90.38

GC content: 59.06

Gene sequence:

>894_bases
GTGTCTACCCATGTTCAAACTCGCGCCCGACACAGAATCGGGCTCGCACCGCTTGCGCTGCTTGCACTCCTGCTGTACGC
CGCATTCCTGATCTACCCGCTCGTGCAGAGCTTCATCACCAGCCTCACCAATCGCAACGTGCTCAACGCCACGAACGCAT
TTATTGGTTTCGCGAACTTCGCCGAGTTGGTGCACGACGAACGTTTCCTGCGCAGCCTGGGCTTCACACTCGTCGTGGTC
CTGTTTGTCACGGTGGTCTCAAACATATTCGGTCTCCTGTTCGCAATGTTGCTCAACGGCCCGGCCCGGCACTACAAGAT
CATGCGAACACTCGTCTTCATTCCACAGGTTCTTTCGGGCGTCATCGTCGCGTTCATTTGGCGCAGCATCCTCACTGAGA
ATGGGCTGCTGAACTCAGTGCTGCAGGGCACCGGGTTGACGCAGCAGCCGATCTCATGGCTGGGCACACCGGCATTGGCG
ACACTCTCGATCTGCGTCGTCGTGAGCTGGATGACAATCGCCTTCACGACGGTCGTGTACACGGCGGCCCTGCAGTCGGT
GCCAGCCGAGTTGCACGAAGCCGCTCGAATGGATGGCGCGGGGCCACTCAACCGCTTTTGCAATGTCACCCTGCCGATGA
TCGCCCCGGGCACCACCATTAGCGTCACCCTCACCCTCATCACAACCCTCAAACTGTTCGACGTCATCGCTGTTCTCACC
GGCGGTGGCCCCGCCAACAGCACAAAATCGGTCGCGTTTTACCTCATTGACGTGGCCTTCACCAGTAACCGATTTGGATA
CGCTTCCGCAATCGCGATGGTGTTACTCGCCCTCACAGCCGTCCTGGCCTACGGGGTTACCTATCTTCTTCGTCGGCGGG
AGGCCCACCTGTGA

Upstream 100 bases:

>100_bases
AAAGAAATAAGCACGCAGCGCGCCGTGAGGGTGTGGGGAATCCTGCTGATTCCCCGCGCCCTCACGCAGTTACTTGCAAA
ACCGCAGAAGGTACCGACAA

Downstream 100 bases:

>100_bases
GCGCGCTTCTATTGAACCGGACTACACGTGGGCGAGCACTCGCCGCGTGGTTGGTCACGGTTGCGTTTATCGTTCCCATC
TACATTGCGCTGGTCAGCGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSTHVQTRARHRIGLAPLALLALLLYAAFLIYPLVQSFITSLTNRNVLNATNAFIGFANFAELVHDERFLRSLGFTLVVV
LFVTVVSNIFGLLFAMLLNGPARHYKIMRTLVFIPQVLSGVIVAFIWRSILTENGLLNSVLQGTGLTQQPISWLGTPALA
TLSICVVVSWMTIAFTTVVYTAALQSVPAELHEAARMDGAGPLNRFCNVTLPMIAPGTTISVTLTLITTLKLFDVIAVLT
GGGPANSTKSVAFYLIDVAFTSNRFGYASAIAMVLLALTAVLAYGVTYLLRRREAHL

Sequences:

>Translated_297_residues
MSTHVQTRARHRIGLAPLALLALLLYAAFLIYPLVQSFITSLTNRNVLNATNAFIGFANFAELVHDERFLRSLGFTLVVV
LFVTVVSNIFGLLFAMLLNGPARHYKIMRTLVFIPQVLSGVIVAFIWRSILTENGLLNSVLQGTGLTQQPISWLGTPALA
TLSICVVVSWMTIAFTTVVYTAALQSVPAELHEAARMDGAGPLNRFCNVTLPMIAPGTTISVTLTLITTLKLFDVIAVLT
GGGPANSTKSVAFYLIDVAFTSNRFGYASAIAMVLLALTAVLAYGVTYLLRRREAHL
>Mature_296_residues
STHVQTRARHRIGLAPLALLALLLYAAFLIYPLVQSFITSLTNRNVLNATNAFIGFANFAELVHDERFLRSLGFTLVVVL
FVTVVSNIFGLLFAMLLNGPARHYKIMRTLVFIPQVLSGVIVAFIWRSILTENGLLNSVLQGTGLTQQPISWLGTPALAT
LSICVVVSWMTIAFTTVVYTAALQSVPAELHEAARMDGAGPLNRFCNVTLPMIAPGTTISVTLTLITTLKLFDVIAVLTG
GGPANSTKSVAFYLIDVAFTSNRFGYASAIAMVLLALTAVLAYGVTYLLRRREAHL

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=280, Percent_Identity=29.2857142857143, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787570, Length=247, Percent_Identity=29.1497975708502, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790465, Length=245, Percent_Identity=26.9387755102041, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32189; Mature: 32057

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHVQTRARHRIGLAPLALLALLLYAAFLIYPLVQSFITSLTNRNVLNATNAFIGFANF
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AELVHDERFLRSLGFTLVVVLFVTVVSNIFGLLFAMLLNGPARHYKIMRTLVFIPQVLSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VIVAFIWRSILTENGLLNSVLQGTGLTQQPISWLGTPALATLSICVVVSWMTIAFTTVVY
HHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
TAALQSVPAELHEAARMDGAGPLNRFCNVTLPMIAPGTTISVTLTLITTLKLFDVIAVLT
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GGGPANSTKSVAFYLIDVAFTSNRFGYASAIAMVLLALTAVLAYGVTYLLRRREAHL
CCCCCCCCHHHHHHEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STHVQTRARHRIGLAPLALLALLLYAAFLIYPLVQSFITSLTNRNVLNATNAFIGFANF
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AELVHDERFLRSLGFTLVVVLFVTVVSNIFGLLFAMLLNGPARHYKIMRTLVFIPQVLSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VIVAFIWRSILTENGLLNSVLQGTGLTQQPISWLGTPALATLSICVVVSWMTIAFTTVVY
HHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
TAALQSVPAELHEAARMDGAGPLNRFCNVTLPMIAPGTTISVTLTLITTLKLFDVIAVLT
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GGGPANSTKSVAFYLIDVAFTSNRFGYASAIAMVLLALTAVLAYGVTYLLRRREAHL
CCCCCCCCHHHHHHEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]