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The map label for this gene is amyC [H]

Identifier: 121611458

GI number: 121611458

Start: 5032280

End: 5033122

Strand: Direct

Name: amyC [H]

Synonym: Veis_4549

Alternate gene names: 121611458

Gene position: 5032280-5033122 (Clockwise)

Preceding gene: 121611457

Following gene: 121611459

Centisome position: 90.4

GC content: 58.48

Gene sequence:

>843_bases
GTGAGCGCGCTTCTATTGAACCGGACTACACGTGGGCGAGCACTCGCCGCGTGGTTGGTCACGGTTGCGTTTATCGTTCC
CATCTACATTGCGCTGGTCAGCGCGTTCAAGAGTCAATCGCAAATTCTCGCCAACCCCCTCGGGCCACCCGTGCCGTTCA
CCTGGGAGAACATCGGCAATGCCCTGTCCCGACCCGATGCCCTCATTCAAACCGGGCTTCTCAACTCGATCGTCGTGACG
GCAGCGACCCTCCTCGTTCTTATCCCCCTCGCCGCCGCCGCAAGTTTCTGGATTTCGGAGCGCACCGGCTGGGTGAAATC
TGGGTTGATTGCGCTCTTTGCGCTCGGCCTCATGATTCCACCACAGGTTGTGCTACAACCAATCGTGTCACTGCTGCAGA
GCGTCGGTCTCGCAAACAGTTACCCGGGGCTGATCCTCTCCAATATCGGTGGCGGGTACATGTCTTTCGCGGTGTTTGTG
TATGTCGGGTTCCTCCGAACCGTGCCACGGGATGTCATCGATGCGGCGCGAATGGACGGTGCCAGTGAACTGCGGGTGTG
GTGGACGATCGTCATGCCGCTGCTACGCCCCGCAACAGCGACCGTGGGGATTTTCCTGGGACTCTGGGTGTGGAATGACT
TCCTCAACCCGCTCTTTATCCTCGGCCCACTGCAAGGGCAGACCATCACCACCGGTATCTACCAGTCCCTGGGGCAGTAC
TCAACCGATTACGGACAGCTCTTCGGAATCATGTTCCTCGCTGCCCTTATCCCGGTCGTGGGCTATCTGGTCACACAGCG
AGAATTCATTCACGGTCTCATGTCAGGAGCATCAAAAGGATGA

Upstream 100 bases:

>100_bases
GATTTGGATACGCTTCCGCAATCGCGATGGTGTTACTCGCCCTCACAGCCGTCCTGGCCTACGGGGTTACCTATCTTCTT
CGTCGGCGGGAGGCCCACCT

Downstream 100 bases:

>100_bases
GTGTGTCACTCGAGGCCCCTGCTCTTGACAGCGACGTTCCGGTGCCCGACGGTGCTATTCCGGTGCCCGACGGTGCCATT
CTCCCGCTTGACAGCCTGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSALLLNRTTRGRALAAWLVTVAFIVPIYIALVSAFKSQSQILANPLGPPVPFTWENIGNALSRPDALIQTGLLNSIVVT
AATLLVLIPLAAAASFWISERTGWVKSGLIALFALGLMIPPQVVLQPIVSLLQSVGLANSYPGLILSNIGGGYMSFAVFV
YVGFLRTVPRDVIDAARMDGASELRVWWTIVMPLLRPATATVGIFLGLWVWNDFLNPLFILGPLQGQTITTGIYQSLGQY
STDYGQLFGIMFLAALIPVVGYLVTQREFIHGLMSGASKG

Sequences:

>Translated_280_residues
MSALLLNRTTRGRALAAWLVTVAFIVPIYIALVSAFKSQSQILANPLGPPVPFTWENIGNALSRPDALIQTGLLNSIVVT
AATLLVLIPLAAAASFWISERTGWVKSGLIALFALGLMIPPQVVLQPIVSLLQSVGLANSYPGLILSNIGGGYMSFAVFV
YVGFLRTVPRDVIDAARMDGASELRVWWTIVMPLLRPATATVGIFLGLWVWNDFLNPLFILGPLQGQTITTGIYQSLGQY
STDYGQLFGIMFLAALIPVVGYLVTQREFIHGLMSGASKG
>Mature_279_residues
SALLLNRTTRGRALAAWLVTVAFIVPIYIALVSAFKSQSQILANPLGPPVPFTWENIGNALSRPDALIQTGLLNSIVVTA
ATLLVLIPLAAAASFWISERTGWVKSGLIALFALGLMIPPQVVLQPIVSLLQSVGLANSYPGLILSNIGGGYMSFAVFVY
VGFLRTVPRDVIDAARMDGASELRVWWTIVMPLLRPATATVGIFLGLWVWNDFLNPLFILGPLQGQTITTGIYQSLGQYS
TDYGQLFGIMFLAALIPVVGYLVTQREFIHGLMSGASKG

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=263, Percent_Identity=29.6577946768061, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30135; Mature: 30004

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50928 ABC_TM1 ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALLLNRTTRGRALAAWLVTVAFIVPIYIALVSAFKSQSQILANPLGPPVPFTWENIGN
CCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ALSRPDALIQTGLLNSIVVTAATLLVLIPLAAAASFWISERTGWVKSGLIALFALGLMIP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PQVVLQPIVSLLQSVGLANSYPGLILSNIGGGYMSFAVFVYVGFLRTVPRDVIDAARMDG
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ASELRVWWTIVMPLLRPATATVGIFLGLWVWNDFLNPLFILGPLQGQTITTGIYQSLGQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCHHHHHHHHHHHHC
STDYGQLFGIMFLAALIPVVGYLVTQREFIHGLMSGASKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SALLLNRTTRGRALAAWLVTVAFIVPIYIALVSAFKSQSQILANPLGPPVPFTWENIGN
CCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ALSRPDALIQTGLLNSIVVTAATLLVLIPLAAAASFWISERTGWVKSGLIALFALGLMIP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PQVVLQPIVSLLQSVGLANSYPGLILSNIGGGYMSFAVFVYVGFLRTVPRDVIDAARMDG
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ASELRVWWTIVMPLLRPATATVGIFLGLWVWNDFLNPLFILGPLQGQTITTGIYQSLGQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCHHHHHHHHHHHHC
STDYGQLFGIMFLAALIPVVGYLVTQREFIHGLMSGASKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]