Click here to switch to the map view.

The map label for this gene is yeiE [H]

Identifier: 121610915

GI number: 121610915

Start: 4387347

End: 4388318

Strand: Direct

Name: yeiE [H]

Synonym: Veis_3997

Alternate gene names: 121610915

Gene position: 4387347-4388318 (Clockwise)

Preceding gene: 121610908

Following gene: 121610918

Centisome position: 78.81

GC content: 69.14

Gene sequence:

>972_bases
ATGATAGGCAGTGCCGATGAAACGAAAAAGCGCAGAATATCTTTCACCATGACGGGAAAAACAGATCAACCGCCGGCCCA
GCGCCTGCGCCTGAACCTGCGCCAGCTCGAAGTCTTCGTGGCCACCGCGCGCGGCGGCAGCACGCGCGCGGCGGCCGAGC
GCATCGCCCGCTCGCAATCGGCCGCCAGCAGCGCGCTGGCGGACCTCGAAAACGCGGTAGGCGCCCGGCTCTTCGACCGC
ATCGGCCGCCGGCTGCTGCTCAACGAGAACGGCCGCGCGCTGCTGCCCAAGGCGCAGGCGCTGATCGAGCAGGCCGGCCA
GGTGCAGGCGCTGTTGCGCGACGAACATGCGGCGCCGCTGCGCGTGGCGGCCAGTTTCACCATCGGCGAATACCTGTTGC
CCGAACGGGTGTCGCAATGGATCGCCATGCACCCGCAAAGCCAGGTGCAACTGCATATCGCCAACACGCGCGACGTGATC
GACGCGGTGGCCGGCCTGGATGTCGATGCGGGCTTCATCGAAGGCCCGCAGACCCACCCCGACCTGGTGGTGCGCGCCTG
GCGCACCGACGAATTGGTGATCGTGGCCGCACCGGGCCATCCGCTGGCCGGCCGCAGAGCCACGCACCGGCAACTGTCCC
AGGCCACCTGGGTGCTGCGCGAGCATGGCTCGGGCACGCGGCAGGTCACCGATGCCTGGCTGATCGAGAACCTGGAGCAG
GTGCATGTGGGCCTGGAACTGGGCAGCACCGAGGCGATCAAGCGCGTGGTGGCCTCGGGCACCGGACTGGCCTGCCTGTC
GCGCTTCGCGGTGGCGCAGGCGCTCGAAGACCGGCACCTGATCGAACTGCGCACACGGCTACCCGCCGGCACCCGGCGGC
TGGCGACCGTCACGCACCGCGACAAGCTGCTGTGCCGCACGACCGCCGATTTTTTGCGCCACTGCGGCGCGCTGGCCCCG
CAGTCTGATTGA

Upstream 100 bases:

>100_bases
GCGGCATGGGCCGCGGCCACCGACAGCGGATCGTGCACAGGCTCGCGGGACAGGAAACGGAACACGGGCGGTCCTTGGGT
TGCAGCTTCGGGCAGGGCCG

Downstream 100 bases:

>100_bases
CCTTGGCGCGCTGGCGCCGCAGCCCGATTGACCTTGGCGCGCTGGCCCCGCAGCCCCATCGATTGCGGCACGCGCGCCGT
GGCTCAGGCCGCCAGAACCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MIGSADETKKRRISFTMTGKTDQPPAQRLRLNLRQLEVFVATARGGSTRAAAERIARSQSAASSALADLENAVGARLFDR
IGRRLLLNENGRALLPKAQALIEQAGQVQALLRDEHAAPLRVAASFTIGEYLLPERVSQWIAMHPQSQVQLHIANTRDVI
DAVAGLDVDAGFIEGPQTHPDLVVRAWRTDELVIVAAPGHPLAGRRATHRQLSQATWVLREHGSGTRQVTDAWLIENLEQ
VHVGLELGSTEAIKRVVASGTGLACLSRFAVAQALEDRHLIELRTRLPAGTRRLATVTHRDKLLCRTTADFLRHCGALAP
QSD

Sequences:

>Translated_323_residues
MIGSADETKKRRISFTMTGKTDQPPAQRLRLNLRQLEVFVATARGGSTRAAAERIARSQSAASSALADLENAVGARLFDR
IGRRLLLNENGRALLPKAQALIEQAGQVQALLRDEHAAPLRVAASFTIGEYLLPERVSQWIAMHPQSQVQLHIANTRDVI
DAVAGLDVDAGFIEGPQTHPDLVVRAWRTDELVIVAAPGHPLAGRRATHRQLSQATWVLREHGSGTRQVTDAWLIENLEQ
VHVGLELGSTEAIKRVVASGTGLACLSRFAVAQALEDRHLIELRTRLPAGTRRLATVTHRDKLLCRTTADFLRHCGALAP
QSD
>Mature_323_residues
MIGSADETKKRRISFTMTGKTDQPPAQRLRLNLRQLEVFVATARGGSTRAAAERIARSQSAASSALADLENAVGARLFDR
IGRRLLLNENGRALLPKAQALIEQAGQVQALLRDEHAAPLRVAASFTIGEYLLPERVSQWIAMHPQSQVQLHIANTRDVI
DAVAGLDVDAGFIEGPQTHPDLVVRAWRTDELVIVAAPGHPLAGRRATHRQLSQATWVLREHGSGTRQVTDAWLIENLEQ
VHVGLELGSTEAIKRVVASGTGLACLSRFAVAQALEDRHLIELRTRLPAGTRRLATVTHRDKLLCRTTADFLRHCGALAP
QSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=43.5540069686411, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1788748, Length=285, Percent_Identity=30.1754385964912, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=28.1853281853282, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787601, Length=303, Percent_Identity=24.7524752475248, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786401, Length=258, Percent_Identity=25.968992248062, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=22.4489795918367, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=228, Percent_Identity=25.8771929824561, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=23.3676975945017, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=24.4979919678715, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788887, Length=246, Percent_Identity=23.9837398373984, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=25.4966887417219, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=296, Percent_Identity=25.3378378378378, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081904, Length=216, Percent_Identity=28.7037037037037, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35288; Mature: 35288

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGSADETKKRRISFTMTGKTDQPPAQRLRLNLRQLEVFVATARGGSTRAAAERIARSQS
CCCCCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHH
AASSALADLENAVGARLFDRIGRRLLLNENGRALLPKAQALIEQAGQVQALLRDEHAAPL
HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCE
RVAASFTIGEYLLPERVSQWIAMHPQSQVQLHIANTRDVIDAVAGLDVDAGFIEGPQTHP
EEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCC
DLVVRAWRTDELVIVAAPGHPLAGRRATHRQLSQATWVLREHGSGTRQVTDAWLIENLEQ
CCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VHVGLELGSTEAIKRVVASGTGLACLSRFAVAQALEDRHLIELRTRLPAGTRRLATVTHR
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH
DKLLCRTTADFLRHCGALAPQSD
HHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIGSADETKKRRISFTMTGKTDQPPAQRLRLNLRQLEVFVATARGGSTRAAAERIARSQS
CCCCCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHH
AASSALADLENAVGARLFDRIGRRLLLNENGRALLPKAQALIEQAGQVQALLRDEHAAPL
HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCE
RVAASFTIGEYLLPERVSQWIAMHPQSQVQLHIANTRDVIDAVAGLDVDAGFIEGPQTHP
EEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCC
DLVVRAWRTDELVIVAAPGHPLAGRRATHRQLSQATWVLREHGSGTRQVTDAWLIENLEQ
CCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VHVGLELGSTEAIKRVVASGTGLACLSRFAVAQALEDRHLIELRTRLPAGTRRLATVTHR
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH
DKLLCRTTADFLRHCGALAPQSD
HHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]