| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610568
Identifier: 121610568
GI number: 121610568
Start: 4026097
End: 4027056
Strand: Direct
Name: 121610568
Synonym: Veis_3641
Alternate gene names: NA
Gene position: 4026097-4027056 (Clockwise)
Preceding gene: 121610562
Following gene: 121610569
Centisome position: 72.32
GC content: 64.38
Gene sequence:
>960_bases ATGAGCAGATCGGTTGTGAAATGGCTGGTGCTGGCCGCAGCATGCGTGCCGGGTCTGGCCGCACAGGCGCAGGCGCAAAA CACCAAACTGGTGCTGGGCATGTCCGGCTGGACGGGCTTTGCGCCGCTGACGCTGGCCGACAAGGCGGGCCTTTTCAGCA AGCATGGCCTGGATGTGGAGATCAAGATGATTGCGCAAAAGGACCGCCATCTGGCCCTGGCCGCCAAGTCGATTCAGTGC GCTGCGACCACGGTCGAGACCCATGTGGCCTGGAATGCCAACGGCGTGCCCATCGTGCAGATTTTTCAGACGGACAAGTC CTACGGCGCCGACGGCCTGGCGGTGCGCGGCGATATCAAGGGCTTTGCCGATCTGCGCGGCAAGACCATTGGCGTGGATG CGCCGGGCACCGCGCCTTTCTTTGGCCTGGCCTGGATGCTCAGCAAGAACGGCATGACGCTCAAGGATGTCAAGCTCACC ACGCTGTCGCCCCAGGCTGCGGCCCAGGCTTTCGTGACCGGGCAAGGCGATGCGGCGATGACCTACGAGCCGTATCTTTC CACCGTGCGCGACAACCCGGCTGCGGGCAAGATTTTGGCCACCACGCTCGACTATCCGATGGTGATCGACACGGTCGGCT GCGACCCCGCCTGGCTCAAGGCCAACCCCCGGGCCGCACAGGCGCTGGCCGATTCCTATTTTGCGGCGCTGGACATGATC CGGGCCGATCCCGCCAAGTCCAACGACATCATGGGCGCGGCGGTCAAGCAGACGGGCGCACAGTTTGCCCGGTCGGCGTC GTTTTTGCGCTGGCAGGATCGGGCCGCGAACCAGCGGTTTTTCGCCGGCGAGCTGACCGCGTTCATGAAGGACGCCACGG CCATCTTGCTGGCGACCGGCATCATCCACAAAGCGCCGGATGATCTGGCCGCGCTGTTCGACGCACGCTTCGTGCAATGA
Upstream 100 bases:
>100_bases CAACCTGTATAGACAGGAATACACTGGCAGTCATCATGCCCGCGCCGGCGCGCGCCAGCGCGGGCGGGCAACGCAATTTT TCTTCAGACAGGAGCAGATG
Downstream 100 bases:
>100_bases GGCCCGTGCCACGGCATCTGTCTGCCGCAGCGCCGCTGCGGCGTGCGCTGACCCCGCTGGCGCCCGTCAGTGCCCGCAGC CGCTGGCTGCTGGGCCTGGC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NMT1/THI5 Like Domain-Containing Protein; NMT1/THI5-Like Domain-Containing Protein; NLPA Lipoprotein; Nitrate/Sulfonate/Bicarbonate ABC Transporter; NlpA Lipoprotein; Amino Acid ABC Transporter; Signal Peptide Protein; NMT1/THI5 Like Family
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSRSVVKWLVLAAACVPGLAAQAQAQNTKLVLGMSGWTGFAPLTLADKAGLFSKHGLDVEIKMIAQKDRHLALAAKSIQC AATTVETHVAWNANGVPIVQIFQTDKSYGADGLAVRGDIKGFADLRGKTIGVDAPGTAPFFGLAWMLSKNGMTLKDVKLT TLSPQAAAQAFVTGQGDAAMTYEPYLSTVRDNPAAGKILATTLDYPMVIDTVGCDPAWLKANPRAAQALADSYFAALDMI RADPAKSNDIMGAAVKQTGAQFARSASFLRWQDRAANQRFFAGELTAFMKDATAILLATGIIHKAPDDLAALFDARFVQ
Sequences:
>Translated_319_residues MSRSVVKWLVLAAACVPGLAAQAQAQNTKLVLGMSGWTGFAPLTLADKAGLFSKHGLDVEIKMIAQKDRHLALAAKSIQC AATTVETHVAWNANGVPIVQIFQTDKSYGADGLAVRGDIKGFADLRGKTIGVDAPGTAPFFGLAWMLSKNGMTLKDVKLT TLSPQAAAQAFVTGQGDAAMTYEPYLSTVRDNPAAGKILATTLDYPMVIDTVGCDPAWLKANPRAAQALADSYFAALDMI RADPAKSNDIMGAAVKQTGAQFARSASFLRWQDRAANQRFFAGELTAFMKDATAILLATGIIHKAPDDLAALFDARFVQ >Mature_318_residues SRSVVKWLVLAAACVPGLAAQAQAQNTKLVLGMSGWTGFAPLTLADKAGLFSKHGLDVEIKMIAQKDRHLALAAKSIQCA ATTVETHVAWNANGVPIVQIFQTDKSYGADGLAVRGDIKGFADLRGKTIGVDAPGTAPFFGLAWMLSKNGMTLKDVKLTT LSPQAAAQAFVTGQGDAAMTYEPYLSTVRDNPAAGKILATTLDYPMVIDTVGCDPAWLKANPRAAQALADSYFAALDMIR ADPAKSNDIMGAAVKQTGAQFARSASFLRWQDRAANQRFFAGELTAFMKDATAILLATGIIHKAPDDLAALFDARFVQ
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33809; Mature: 33678
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSVVKWLVLAAACVPGLAAQAQAQNTKLVLGMSGWTGFAPLTLADKAGLFSKHGLDVE CCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCEE IKMIAQKDRHLALAAKSIQCAATTVETHVAWNANGVPIVQIFQTDKSYGADGLAVRGDIK EEEEECCCCEEEEEECCEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC GFADLRGKTIGVDAPGTAPFFGLAWMLSKNGMTLKDVKLTTLSPQAAAQAFVTGQGDAAM CHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEEEECHHHHHEEEEECCCCCEE TYEPYLSTVRDNPAAGKILATTLDYPMVIDTVGCDPAWLKANPRAAQALADSYFAALDMI EEHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHH RADPAKSNDIMGAAVKQTGAQFARSASFLRWQDRAANQRFFAGELTAFMKDATAILLATG HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH IIHKAPDDLAALFDARFVQ HHHCCCHHHHHHHHHHCCC >Mature Secondary Structure SRSVVKWLVLAAACVPGLAAQAQAQNTKLVLGMSGWTGFAPLTLADKAGLFSKHGLDVE CHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCEE IKMIAQKDRHLALAAKSIQCAATTVETHVAWNANGVPIVQIFQTDKSYGADGLAVRGDIK EEEEECCCCEEEEEECCEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC GFADLRGKTIGVDAPGTAPFFGLAWMLSKNGMTLKDVKLTTLSPQAAAQAFVTGQGDAAM CHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEEEECHHHHHEEEEECCCCCEE TYEPYLSTVRDNPAAGKILATTLDYPMVIDTVGCDPAWLKANPRAAQALADSYFAALDMI EEHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHH RADPAKSNDIMGAAVKQTGAQFARSASFLRWQDRAANQRFFAGELTAFMKDATAILLATG HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH IIHKAPDDLAALFDARFVQ HHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA