| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609825
Identifier: 121609825
GI number: 121609825
Start: 3223142
End: 3223627
Strand: Direct
Name: 121609825
Synonym: Veis_2878
Alternate gene names: NA
Gene position: 3223142-3223627 (Clockwise)
Preceding gene: 121609813
Following gene: 121609826
Centisome position: 57.9
GC content: 68.52
Gene sequence:
>486_bases ATGACACAGCCCCCGCCCGAAGCGCATCTTTTCGTCAACGACTACCTGCCGGCGCTGCTGGCGCAGGCCAGTTGGCTGAT TTCCTCGGAGTTCCATGGGGTGGCTCGGGCGCATGGCTTTTCCGTCTCCGAATGGCGCGTGCTGGCCTCGCTGGCCGGCG GTGTGCCGATCAGCATCGGCCGGCTGGCGCAACTGTCGGTGACCAAGCAGCCGACGGTCACCCGCCTGCTCGACCGGATG CAGGCCAAGAACCATGTCGAGCGCCTGCCCCACGACAGTGACCGCCGCATCACGCTGGTGCGCATCACGCCCACCGGCAT ACAGGCCGTGCAGCAGTTGATCGACCTGGCGCGCGAGCACGAGCGGCGCGTGCTCGCGCCCTTCGGCCTGGCGCGTGCCG GGGAATTGAAGAGCACGCTGCGGCAGATGATTGCGCAACATGCGCGCGCCGAGGCGCAGCCGCAAGCGCCAGACGACGCG CGCTGA
Upstream 100 bases:
>100_bases CGGTCCATCTGCTCGTGCTTTAAGTCTAAATAAATCCAATATCATTGATATACCTGCTAACCCTAACACTTTCCATGCCC GCTCCGAACCCGCTTGCCGT
Downstream 100 bases:
>100_bases GCGCCCCCGGCGGCCGCCCGGCAGGCGTTGGCCCCGGAGCGTGGCCGCTGCGCGTTGCCGCAGGGGCGGCTTTGCTCCAA CGCGCTGCGCCGGGGTCGGC
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; Transcription Regulator Protein; Transcriptional Regulator; TRANSCRIPTIONal REGULATOR MarR Family; Regulatory Protein MarR; MarR Family Regulatory Helix-Turn-Helix
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MTQPPPEAHLFVNDYLPALLAQASWLISSEFHGVARAHGFSVSEWRVLASLAGGVPISIGRLAQLSVTKQPTVTRLLDRM QAKNHVERLPHDSDRRITLVRITPTGIQAVQQLIDLAREHERRVLAPFGLARAGELKSTLRQMIAQHARAEAQPQAPDDA R
Sequences:
>Translated_161_residues MTQPPPEAHLFVNDYLPALLAQASWLISSEFHGVARAHGFSVSEWRVLASLAGGVPISIGRLAQLSVTKQPTVTRLLDRM QAKNHVERLPHDSDRRITLVRITPTGIQAVQQLIDLAREHERRVLAPFGLARAGELKSTLRQMIAQHARAEAQPQAPDDA R >Mature_160_residues TQPPPEAHLFVNDYLPALLAQASWLISSEFHGVARAHGFSVSEWRVLASLAGGVPISIGRLAQLSVTKQPTVTRLLDRMQ AKNHVERLPHDSDRRITLVRITPTGIQAVQQLIDLAREHERRVLAPFGLARAGELKSTLRQMIAQHARAEAQPQAPDDAR
Specific function: Unknown
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17827; Mature: 17696
Theoretical pI: Translated: 10.93; Mature: 10.93
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPPPEAHLFVNDYLPALLAQASWLISSEFHGVARAHGFSVSEWRVLASLAGGVPISIG CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC RLAQLSVTKQPTVTRLLDRMQAKNHVERLPHDSDRRITLVRITPTGIQAVQQLIDLAREH CHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH ERRVLAPFGLARAGELKSTLRQMIAQHARAEAQPQAPDDAR HHHECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TQPPPEAHLFVNDYLPALLAQASWLISSEFHGVARAHGFSVSEWRVLASLAGGVPISIG CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC RLAQLSVTKQPTVTRLLDRMQAKNHVERLPHDSDRRITLVRITPTGIQAVQQLIDLAREH CHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH ERRVLAPFGLARAGELKSTLRQMIAQHARAEAQPQAPDDAR HHHECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA