Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 120611479

GI number: 120611479

Start: 3088522

End: 3089250

Strand: Direct

Name: ycdC [C]

Synonym: Aave_2815

Alternate gene names: 120611479

Gene position: 3088522-3089250 (Clockwise)

Preceding gene: 120611470

Following gene: 120611480

Centisome position: 57.7

GC content: 66.67

Gene sequence:

>729_bases
ATGGCCTCCCGCTCCCCCGCCTCCCCTCTCTCTTCGACGCCATCGCCCCGGCGCGCCCGCCGCAAGGAAGCGCGGCCGGG
CGAGTTGATCGAGGCTGCGCTCGATCTGTTCGTGGAGCGCGGCTACGCCGCCACCAAAGTGGATGAGGTGGCGGCGAGGG
CCGGGGTTTCCAAGGGCACCCTGTTCCTGTATTTCCCGAGCAAGGAAGACCTCTTCAAGGCGGTGGCGCGCCACAATCTG
GCCCGGCACTTCACGGAATGGGACGTGGAGATCGAGCACTATCCCCACAGCACGTCCGAACTGCTGCGCTATGCCTACGA
GCTCTGGTGGGAGCATATCGGCGCCACCAAGGCCTCCGCCATCTCCAAGCTGGTGTTGAGCGAAGCGCACAACTTTCCCG
ACATCGCGGCGTTCTACCGCAACGAGGTCGTGCTTCCGGGCAACCGGCTCATCCGCCGCATCCTCGAGCGCGGCATGCAG
CGGGGGGAGTTCCGCAAGCTCGACCTCGACTGCGCGGTGCATGTGGTGGCCGCGCCGCTGGTGTTCATGATGATGTGGCG
CCATTCCGGCGTCTGCATGCCCGCGTCGGACGAAGTGACGCCGCAGCGCTTCATCGATGCGCAGGTGGACAGCCTGCTGG
CGGGTTTCTGCGTGCGCCAGGACGCGCCCGCTGCCCAACCGCGGGCGAAGCGGGCGGTACGCGCGCCTAAAATGGATGGT
TTGTCCTGA

Upstream 100 bases:

>100_bases
GGTAAGGAGACGGCGGCCCGGCCCTTGTGGGAATTGTCCGCGCCGCCACGTTGACGCCACCACGCTCCGCCGCTACATTA
CTAACCAGTCAGTCATTAAT

Downstream 100 bases:

>100_bases
CCCCGTGCACCGGAGAAATCCCCCATGACCCTCCCCCTGAACACGACCGCCGACGCGAACGACCCCGTGACGCTGGCCCG
CTACAACATGATCGAGCAGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcription Regulator Protein; TetR Family Protein Transcriptional Regulatory Protein; Transcription Regulator TetR Family; TetR Family Transcription Regulator Protein; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulatory Protein; Regulatory Protein Tetr; TetR-Family Transcriptional Regulator; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MASRSPASPLSSTPSPRRARRKEARPGELIEAALDLFVERGYAATKVDEVAARAGVSKGTLFLYFPSKEDLFKAVARHNL
ARHFTEWDVEIEHYPHSTSELLRYAYELWWEHIGATKASAISKLVLSEAHNFPDIAAFYRNEVVLPGNRLIRRILERGMQ
RGEFRKLDLDCAVHVVAAPLVFMMMWRHSGVCMPASDEVTPQRFIDAQVDSLLAGFCVRQDAPAAQPRAKRAVRAPKMDG
LS

Sequences:

>Translated_242_residues
MASRSPASPLSSTPSPRRARRKEARPGELIEAALDLFVERGYAATKVDEVAARAGVSKGTLFLYFPSKEDLFKAVARHNL
ARHFTEWDVEIEHYPHSTSELLRYAYELWWEHIGATKASAISKLVLSEAHNFPDIAAFYRNEVVLPGNRLIRRILERGMQ
RGEFRKLDLDCAVHVVAAPLVFMMMWRHSGVCMPASDEVTPQRFIDAQVDSLLAGFCVRQDAPAAQPRAKRAVRAPKMDG
LS
>Mature_241_residues
ASRSPASPLSSTPSPRRARRKEARPGELIEAALDLFVERGYAATKVDEVAARAGVSKGTLFLYFPSKEDLFKAVARHNLA
RHFTEWDVEIEHYPHSTSELLRYAYELWWEHIGATKASAISKLVLSEAHNFPDIAAFYRNEVVLPGNRLIRRILERGMQR
GEFRKLDLDCAVHVVAAPLVFMMMWRHSGVCMPASDEVTPQRFIDAQVDSLLAGFCVRQDAPAAQPRAKRAVRAPKMDGL
S

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27187; Mature: 27055

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRSPASPLSSTPSPRRARRKEARPGELIEAALDLFVERGYAATKVDEVAARAGVSKGT
CCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCE
LFLYFPSKEDLFKAVARHNLARHFTEWDVEIEHYPHSTSELLRYAYELWWEHIGATKASA
EEEEECCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHH
ISKLVLSEAHNFPDIAAFYRNEVVLPGNRLIRRILERGMQRGEFRKLDLDCAVHVVAAPL
HHHHHHHHCCCCCHHHHHHHCCEECCHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHH
VFMMMWRHSGVCMPASDEVTPQRFIDAQVDSLLAGFCVRQDAPAAQPRAKRAVRAPKMDG
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
LS
CC
>Mature Secondary Structure 
ASRSPASPLSSTPSPRRARRKEARPGELIEAALDLFVERGYAATKVDEVAARAGVSKGT
CCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCE
LFLYFPSKEDLFKAVARHNLARHFTEWDVEIEHYPHSTSELLRYAYELWWEHIGATKASA
EEEEECCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHH
ISKLVLSEAHNFPDIAAFYRNEVVLPGNRLIRRILERGMQRGEFRKLDLDCAVHVVAAPL
HHHHHHHHCCCCCHHHHHHHCCEECCHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHH
VFMMMWRHSGVCMPASDEVTPQRFIDAQVDSLLAGFCVRQDAPAAQPRAKRAVRAPKMDG
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
LS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA