The gene/protein map for NC_008752 is currently unavailable.
Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

Click here to switch to the map view.

The map label for this gene is ytrE [H]

Identifier: 120611476

GI number: 120611476

Start: 3086587

End: 3087270

Strand: Reverse

Name: ytrE [H]

Synonym: Aave_2812

Alternate gene names: 120611476

Gene position: 3087270-3086587 (Counterclockwise)

Preceding gene: 120611477

Following gene: 120611475

Centisome position: 57.68

GC content: 77.34

Gene sequence:

>684_bases
ATGATCCGGTCCCGAGGGCTGGAGTTCGCCCATCCCGGCGGCCCGTTCCTGCGTTTCCCCGACGTGGACCTGCCCCAGGG
CGGCTGCCTGCTGCTGCGCGGGCCTTCGGGCTCCGGAAAATCCACCTGGCTGGCCCTGACCGCCGGCCTGCGCTCGGCAT
CGGCGGGCACGCTGGTGGTGGCGGGCCGGGATCTGGCCGGAGAGGCACGGCCCGGCCAAGCCGCGCGCGACACGTGGCGC
GCGCGCGCCGTCGGCTTCCTGCCGCAGGCACTGCATCTGTCGCCTGCGCTCACCGTCGCCGAGAACCTCGCGCTGGCCTT
CTTCGCGGCCGGGCTGCCCCGGGACGACCGGGCGATCGCCGCGGTGCTGGACCGCCTGGACCTCGGCGCGCTGGCCCGGC
GCCATCCTCACCAGCTCTCCGGTGGCCAGGCCCAGCGGGTGGCGCTGGCGCGCGCCGTGCTGCTGTCGCCGCGCGTTCTG
CTGGCCGACGAGCCCACCGCCAGCCTGGACGACGAGGCCGCCGCCGCGGCGCTGGCGCTGCTGGCCGGTAGCGCTGCCGG
CTGCGGGGCCACGCTGGTGGTCGCCACGCACGACCGCCGCACGATCGACGCGCTCGCGCTCCGGGCCGTCACGGTGTCGC
TGGAGCGGCCGGCGCGGCCCCGGGCCGTGGAGGCCGGGTCATGA

Upstream 100 bases:

>100_bases
AGGCCCTGGCGGAAGCCGGCCACGCCGAGCTGGCCGCGGACGTTTCCGTGCGCGGCCGGTGCGCGGAATGCGCGCACACC
GTGGCCCGGGAGACCCGCGG

Downstream 100 bases:

>100_bases
GTGCGCCGGCCCGCTTCGGCGAACTCCTGCGGCTGTCGTGGCGGTATCTCTGGTCGCGCCCGCTGGCATCGGCGCTCAAC
CTGCTGCTGCTGACACTCGG

Product: ABC transporter-like protein

Products: ADP; phosphate; L-arginine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MIRSRGLEFAHPGGPFLRFPDVDLPQGGCLLLRGPSGSGKSTWLALTAGLRSASAGTLVVAGRDLAGEARPGQAARDTWR
ARAVGFLPQALHLSPALTVAENLALAFFAAGLPRDDRAIAAVLDRLDLGALARRHPHQLSGGQAQRVALARAVLLSPRVL
LADEPTASLDDEAAAAALALLAGSAAGCGATLVVATHDRRTIDALALRAVTVSLERPARPRAVEAGS

Sequences:

>Translated_227_residues
MIRSRGLEFAHPGGPFLRFPDVDLPQGGCLLLRGPSGSGKSTWLALTAGLRSASAGTLVVAGRDLAGEARPGQAARDTWR
ARAVGFLPQALHLSPALTVAENLALAFFAAGLPRDDRAIAAVLDRLDLGALARRHPHQLSGGQAQRVALARAVLLSPRVL
LADEPTASLDDEAAAAALALLAGSAAGCGATLVVATHDRRTIDALALRAVTVSLERPARPRAVEAGS
>Mature_227_residues
MIRSRGLEFAHPGGPFLRFPDVDLPQGGCLLLRGPSGSGKSTWLALTAGLRSASAGTLVVAGRDLAGEARPGQAARDTWR
ARAVGFLPQALHLSPALTVAENLALAFFAAGLPRDDRAIAAVLDRLDLGALARRHPHQLSGGQAQRVALARAVLLSPRVL
LADEPTASLDDEAAAAALALLAGSAAGCGATLVVATHDRRTIDALALRAVTVSLERPARPRAVEAGS

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27262624, Length=205, Percent_Identity=32.1951219512195, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262626, Length=205, Percent_Identity=32.1951219512195, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI171184400, Length=223, Percent_Identity=32.2869955156951, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI9961250, Length=205, Percent_Identity=30.7317073170732, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27477115, Length=150, Percent_Identity=34, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46592915, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI46592964, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI46592956, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI46592978, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI46592898, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI46592971, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI153792144, Length=150, Percent_Identity=32, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI4505771, Length=202, Percent_Identity=29.2079207920792, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI9961252, Length=202, Percent_Identity=29.2079207920792, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI255708477, Length=208, Percent_Identity=29.8076923076923, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI148612844, Length=208, Percent_Identity=29.8076923076923, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI105990541, Length=185, Percent_Identity=27.5675675675676, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI42741659, Length=208, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI156105685, Length=206, Percent_Identity=29.6116504854369, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787089, Length=196, Percent_Identity=40.3061224489796, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=37.4429223744292, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1789672, Length=190, Percent_Identity=35.2631578947368, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=37, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787370, Length=208, Percent_Identity=33.6538461538462, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1786703, Length=177, Percent_Identity=40.1129943502825, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787105, Length=195, Percent_Identity=36.4102564102564, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI87081709, Length=181, Percent_Identity=33.1491712707182, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790467, Length=198, Percent_Identity=34.3434343434343, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786872, Length=170, Percent_Identity=39.4117647058824, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787029, Length=214, Percent_Identity=31.3084112149533, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081791, Length=190, Percent_Identity=33.6842105263158, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081834, Length=176, Percent_Identity=35.7954545454545, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787712, Length=180, Percent_Identity=35, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790544, Length=194, Percent_Identity=36.0824742268041, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=32.4675324675325, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787500, Length=200, Percent_Identity=31.5, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1786398, Length=190, Percent_Identity=32.6315789473684, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI87082267, Length=194, Percent_Identity=30.4123711340206, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=32.5581395348837, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=34.3283582089552, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1786319, Length=195, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789032, Length=177, Percent_Identity=31.638418079096, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786253, Length=200, Percent_Identity=33, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789962, Length=209, Percent_Identity=29.1866028708134, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786698, Length=181, Percent_Identity=29.8342541436464, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788644, Length=169, Percent_Identity=33.7278106508876, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693107, Length=200, Percent_Identity=32, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790534, Length=193, Percent_Identity=33.160621761658, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=32.2916666666667, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=30.6976744186047, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786345, Length=204, Percent_Identity=31.3725490196078, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788165, Length=179, Percent_Identity=31.8435754189944, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994943, Length=176, Percent_Identity=29.5454545454545, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790190, Length=210, Percent_Identity=27.1428571428571, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790739, Length=219, Percent_Identity=29.2237442922374, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48995001, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787143, Length=191, Percent_Identity=32.9842931937173, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=165, Percent_Identity=32.1212121212121, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787758, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789963, Length=186, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787164, Length=193, Percent_Identity=34.1968911917098, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787547, Length=178, Percent_Identity=28.0898876404494, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789890, Length=199, Percent_Identity=31.1557788944724, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17569143, Length=211, Percent_Identity=31.7535545023697, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=204, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=181, Percent_Identity=27.6243093922652, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=208, Percent_Identity=28.8461538461538, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=203, Percent_Identity=28.0788177339901, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24666092, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24582014, Length=178, Percent_Identity=30.3370786516854, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582012, Length=178, Percent_Identity=30.3370786516854, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24581191, Length=176, Percent_Identity=29.5454545454545, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581189, Length=176, Percent_Identity=29.5454545454545, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581193, Length=176, Percent_Identity=29.5454545454545, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581195, Length=176, Percent_Identity=29.5454545454545, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281362751, Length=183, Percent_Identity=28.9617486338798, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650855, Length=209, Percent_Identity=28.2296650717703, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24650853, Length=209, Percent_Identity=28.2296650717703, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281363262, Length=214, Percent_Identity=31.7757009345794, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85726357, Length=218, Percent_Identity=28.4403669724771, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24653245, Length=214, Percent_Identity=31.7757009345794, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641565, Length=217, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17136662, Length=224, Percent_Identity=28.125, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23356; Mature: 23356

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MIRSRGLEFAHPGGPFLRFPDVDLPQGGCLLLRGPSGSGKSTWLALTAGLRSASAGTLVV
CCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCEEEE
AGRDLAGEARPGQAARDTWRARAVGFLPQALHLSPALTVAENLALAFFAAGLPRDDRAIA
ECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHH
AVLDRLDLGALARRHPHQLSGGQAQRVALARAVLLSPRVLLADEPTASLDDEAAAAALAL
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHH
LAGSAAGCGATLVVATHDRRTIDALALRAVTVSLERPARPRAVEAGS
HHCCCCCCCEEEEEEECCCHHHHHHHHHHEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MIRSRGLEFAHPGGPFLRFPDVDLPQGGCLLLRGPSGSGKSTWLALTAGLRSASAGTLVV
CCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCEEEE
AGRDLAGEARPGQAARDTWRARAVGFLPQALHLSPALTVAENLALAFFAAGLPRDDRAIA
ECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHH
AVLDRLDLGALARRHPHQLSGGQAQRVALARAVLLSPRVLLADEPTASLDDEAAAAALAL
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHH
LAGSAAGCGATLVVATHDRRTIDALALRAVTVSLERPARPRAVEAGS
HHCCCCCCCEEEEEEECCCHHHHHHHHHHEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-arginine [Periplasm]; H2O [C]

Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]