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The map label for this gene is cobD [H]

Identifier: 120610569

GI number: 120610569

Start: 2044398

End: 2045402

Strand: Direct

Name: cobD [H]

Synonym: Aave_1889

Alternate gene names: 120610569

Gene position: 2044398-2045402 (Clockwise)

Preceding gene: 120610568

Following gene: 120610573

Centisome position: 38.19

GC content: 71.24

Gene sequence:

>1005_bases
ATGATTGCCGGCATGAGCTTCTTTGCCATCCTCATGGCGTTGCTGATCGAGCAGGCCCGCCCGCTGGCCCGCAGCAACCC
GATCCATGCCGGCGTGCGCGCGTGGGCGCTGTCCGTGAGCCGCAATTTCGATGCGGGCAAGCCGCACCATGGCTGGGTGG
CATGGACCCTCGCGGTGTGCGTGCCGTCGCTGGCAGTGCTGGGCGTGCACTGGCTGCTGATGGTGGCCATCGGCTGGCCG
GCCGCCGTGGTGTGGAGCATCGCCGTGCTCTATCTCACGCTGGGCTTCCGGCAGTTCAGCCACCACTTCACGAACATCCG
GGATGCGCTGGAAGAGCGCGACGAGGACGCCGCCCGGGCCCGCCTGGCCGCCTGGCAGCAGGTGGACGTGGGCCTGCTGC
CGCGCAGCGAGATCGTGCGGCACGTGATCGAGTATTCCGTGATCGCGGCGCACCGCCATGTCTTCGGGGTGCTGGCCTGG
TTCTCCATCCTGGCGGCACTGGGCCTCGGCCCCGCGGGCGCGGTGTTCTACCGGCTCGCGGAATTCGTGTCGCGCTACTG
GAAGGCGGGCGGGCGCGGCGCCAGCCTCGTGCATCCCGGCAGCGAGCCGCTGCAGCGCGCCTCCGCCCAGGCCTGGACGG
TGGTGGACTGGCTGCCCGCGCGCCTCACGGCCCTCAGCTTCGCCGTGGTGGGCAGCTTCGAGGAAGCCATCGACGGCTGG
CGCTTCCATGCGCAGCATTTTCCCAATGACAACGACGGCGTGATCCTGGCGGCCACCGCCGGTGCCATCAATGTGCGCCT
CGGCGGCGAAGTCCTGCAGGCACGGCAGGACGCGCTGGGCGAGGGCCTCCTGCCGCCCGAGCCCGGGCCGGCCGGCGGCG
ACAGCACCCCGGGCAGGGAGCCCGAAGTGGCCCACCTGCGCGGCGTCGTGGGCCTGGTATGGCGCTCTGTCGTGGTGTGG
ATGCTGCTGCTCGCCCTGCTCACCCTGGCCCGCCTGCTCGGCTGA

Upstream 100 bases:

>100_bases
GGCGGGCATGCTGCGCAATTTCTACCGCTTCCTGCTGGCCTGAGCCGGCGGCGTGCCGGTAGCGGGTCGGCCGCAATGTT
TCCTGTGGTTACGGCCCAGT

Downstream 100 bases:

>100_bases
AGCCGGGGCGCCGCCCCGGGCGCCGGCCCTCCGCTGCATTGCTCACCAGTGGCGGTGCGTGCTCAGTTCCTCGTACAGCT
GGCGGTAGATCTGGTAGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MIAGMSFFAILMALLIEQARPLARSNPIHAGVRAWALSVSRNFDAGKPHHGWVAWTLAVCVPSLAVLGVHWLLMVAIGWP
AAVVWSIAVLYLTLGFRQFSHHFTNIRDALEERDEDAARARLAAWQQVDVGLLPRSEIVRHVIEYSVIAAHRHVFGVLAW
FSILAALGLGPAGAVFYRLAEFVSRYWKAGGRGASLVHPGSEPLQRASAQAWTVVDWLPARLTALSFAVVGSFEEAIDGW
RFHAQHFPNDNDGVILAATAGAINVRLGGEVLQARQDALGEGLLPPEPGPAGGDSTPGREPEVAHLRGVVGLVWRSVVVW
MLLLALLTLARLLG

Sequences:

>Translated_334_residues
MIAGMSFFAILMALLIEQARPLARSNPIHAGVRAWALSVSRNFDAGKPHHGWVAWTLAVCVPSLAVLGVHWLLMVAIGWP
AAVVWSIAVLYLTLGFRQFSHHFTNIRDALEERDEDAARARLAAWQQVDVGLLPRSEIVRHVIEYSVIAAHRHVFGVLAW
FSILAALGLGPAGAVFYRLAEFVSRYWKAGGRGASLVHPGSEPLQRASAQAWTVVDWLPARLTALSFAVVGSFEEAIDGW
RFHAQHFPNDNDGVILAATAGAINVRLGGEVLQARQDALGEGLLPPEPGPAGGDSTPGREPEVAHLRGVVGLVWRSVVVW
MLLLALLTLARLLG
>Mature_334_residues
MIAGMSFFAILMALLIEQARPLARSNPIHAGVRAWALSVSRNFDAGKPHHGWVAWTLAVCVPSLAVLGVHWLLMVAIGWP
AAVVWSIAVLYLTLGFRQFSHHFTNIRDALEERDEDAARARLAAWQQVDVGLLPRSEIVRHVIEYSVIAAHRHVFGVLAW
FSILAALGLGPAGAVFYRLAEFVSRYWKAGGRGASLVHPGSEPLQRASAQAWTVVDWLPARLTALSFAVVGSFEEAIDGW
RFHAQHFPNDNDGVILAATAGAINVRLGGEVLQARQDALGEGLLPPEPGPAGGDSTPGREPEVAHLRGVVGLVWRSVVVW
MLLLALLTLARLLG

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 36195; Mature: 36195

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA