Click here to switch to the map view.

The map label for this gene is ysgA [H]

Identifier: 120610518

GI number: 120610518

Start: 1992040

End: 1992822

Strand: Direct

Name: ysgA [H]

Synonym: Aave_1838

Alternate gene names: 120610518

Gene position: 1992040-1992822 (Clockwise)

Preceding gene: 120610517

Following gene: 120610522

Centisome position: 37.22

GC content: 73.56

Gene sequence:

>783_bases
ATGACCGCCGGGCCGACCTTCATCCAGTCGCGCGACAACGCATTCGTGAAGGACCTGCGGCGGCTGGCGCAGGACAGCGG
CGCCTACCGCCGCCAGGGCCGCGTCTGGCTCGAGGGCGACCACCTCTGCCGTGCCGCACTGGAGCGCGGCGTGCAGCCGG
CCATCGGCGTCTATGCCGAATCCGCCTGGCCGGAGTGGGAGCGCGAATGGGGAGCGGCCGCCGCACGCAACGTGGTGCTG
GCCGATGCGCTCTGGGCCGACGTGAGCGGGCTGGAATCGCCGGCGCGCATGGGCTTCGTGGTGCCCGTGCCCGAGGCGCC
GGTGCTGCAGGCCGGCCTGCCGACCGTGGTGCTGGACCGGCTGCAGGATGCGGGCAACGTGGGGTCCATCCTGCGCAGCG
CCTCGGCTTTCGGTTTCCGCCAGGTGGCGGCCCTGAAAGGCACGGCGGGCCTCTGGAGCCCCAAGGTGCTGCGGGCCGGC
ATGGGCGCGCATTTCGCGCTGCACCTGGTGGAGGGGCTGGCGGTGGACGACATCGACGCGCTGGCCCTGCCGCTGCTGGC
CACGAGTTCGCACGGCGGCGACCTGCTGCACCGCGCGCGCCTGCCCTGGCCCTGCGGCTGGATCCTGGGCCACGAGGGGC
AGGGCGTTTCCGAGGCGCTGCAGCAGCGCGCCACGCACCTGATCCGTATCGCGCAGCCGGGCGGCGAGGAATCGCTCAAC
GTGGGGGCGGCGGCGGCCATCTGCCTGCACGCGAGCGCGGCGCACGCGGATTCCTCAGAGTAA

Upstream 100 bases:

>100_bases
GCACCGTGGTCATGCAGGCCACCGCCACCATCGTGACGACCGTGGAAACCACCGTCTCCGTACGCCCCGCGGCGCCCCGG
GCCGCGGAAGGGCTGCACGC

Downstream 100 bases:

>100_bases
GGCCGGTCATCCTGCTGGCGGCACGGGCGACGCGCTATGCATCGCGGGGCAGGAAAGCATCTCCCGCCGTGAGCGGCGGA
TGCCGGTAGGTGGCCGGGGT

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTAGPTFIQSRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPEWEREWGAAAARNVVL
ADALWADVSGLESPARMGFVVPVPEAPVLQAGLPTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAG
MGAHFALHLVEGLAVDDIDALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEESLN
VGAAAAICLHASAAHADSSE

Sequences:

>Translated_260_residues
MTAGPTFIQSRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPEWEREWGAAAARNVVL
ADALWADVSGLESPARMGFVVPVPEAPVLQAGLPTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAG
MGAHFALHLVEGLAVDDIDALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEESLN
VGAAAAICLHASAAHADSSE
>Mature_259_residues
TAGPTFIQSRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPEWEREWGAAAARNVVLA
DALWADVSGLESPARMGFVVPVPEAPVLQAGLPTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGM
GAHFALHLVEGLAVDDIDALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEESLNV
GAAAAICLHASAAHADSSE

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=179, Percent_Identity=33.5195530726257, Blast_Score=79, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27502; Mature: 27371

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGPTFIQSRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAE
CCCCCCHHHCCCCHHHHHHHHHHHHCCCHHHCCCEEECHHHHHHHHHHCCCCCHHHHHCC
SAWPEWEREWGAAAARNVVLADALWADVSGLESPARMGFVVPVPEAPVLQAGLPTVVLDR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHCCCHHHHHHH
LQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHFALHLVEGLAVDDIDA
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHH
LALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEESLN
HHHHHHHCCCCCCHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHEEEEECCCCCCCCC
VGAAAAICLHASAAHADSSE
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAGPTFIQSRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAE
CCCCCHHHCCCCHHHHHHHHHHHHCCCHHHCCCEEECHHHHHHHHHHCCCCCHHHHHCC
SAWPEWEREWGAAAARNVVLADALWADVSGLESPARMGFVVPVPEAPVLQAGLPTVVLDR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHCCCHHHHHHH
LQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHFALHLVEGLAVDDIDA
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHH
LALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEESLN
HHHHHHHCCCCCCHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHEEEEECCCCCCCCC
VGAAAAICLHASAAHADSSE
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]