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The map label for this gene is ydhC [H]

Identifier: 120610195

GI number: 120610195

Start: 1674201

End: 1674869

Strand: Direct

Name: ydhC [H]

Synonym: Aave_1510

Alternate gene names: 120610195

Gene position: 1674201-1674869 (Clockwise)

Preceding gene: 120610194

Following gene: 120610196

Centisome position: 31.28

GC content: 71.75

Gene sequence:

>669_bases
ATGCGCATACCGACAGCCTCCCTGCACGACAACGTCGCCGAACGCCTGCGCGAGCAGATCTTCGCCGGGGAGTTCGCGCC
GGGCGCCTTCCTGGATGAAACGGCACTGTGCGAGCGCCTCGCCATTTCCCGCACCCCGCTGCGCGAGGCCCTGAAGGTGC
TCACGGCCGAGGGCCTGCTGCGCCATGAGCCCCGGCGGGGCTGCTTCGTGGCCGAGGTGACGGAGCGGGACCTGGACGAA
ATCTTTCCCGTGATCGCCCTGCTGGAGGGCCGCGCCGCGCACGAGGCGACGGTGCGCGCCGGCATGGCCGACGTGGCTGC
GCTGGAGGTGCTGCACGAGCGGCTGCAGGAGCACGCGGCGGCCGGGCGCATCGCCGAGTACTACGCGGCCAACCATGCCA
TCCACGAGGCCTTCATCGTGCTGGCCGACAACCGCTGGCTGGCCCAGGTGATCGGCGACCTGCGCAAGATCCTGCGCCTG
GCGCGGCTGCAGCAATTGCATGCGCCCGGCCGCCTGCAGCAGAGCCTGGCGGAGCACCTGGCGGTGTTCGCCGCGCTGCG
GCGCGGGGACGCCGAGGCCGCCGAGCAGGCCATGCGCAACCATCTTCTCGCGCAGCGCGTGGCGCTGCGCGACATCGCCC
GCCACCACCACTCCAGGATCGCTCCATGA

Upstream 100 bases:

>100_bases
GAAGCTGCTCATAATTATGAGAAATTATGGCGCGGCGACCGGGATATGTCCGCCCCTGCCATTCTTCGGTTCCTGAAAGG
CCTTCGCCGGCATCTTTTCC

Downstream 100 bases:

>100_bases
ATGCCGCTTCCGAATGGATCACGCGCAGTGTCGCCCGCCTGCGCACCGAAGCCCCGCTCGCCGACCTCGATGCCGCGGGC
GCGGCAGGCGGTGGCCGCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRIPTASLHDNVAERLREQIFAGEFAPGAFLDETALCERLAISRTPLREALKVLTAEGLLRHEPRRGCFVAEVTERDLDE
IFPVIALLEGRAAHEATVRAGMADVAALEVLHERLQEHAAAGRIAEYYAANHAIHEAFIVLADNRWLAQVIGDLRKILRL
ARLQQLHAPGRLQQSLAEHLAVFAALRRGDAEAAEQAMRNHLLAQRVALRDIARHHHSRIAP

Sequences:

>Translated_222_residues
MRIPTASLHDNVAERLREQIFAGEFAPGAFLDETALCERLAISRTPLREALKVLTAEGLLRHEPRRGCFVAEVTERDLDE
IFPVIALLEGRAAHEATVRAGMADVAALEVLHERLQEHAAAGRIAEYYAANHAIHEAFIVLADNRWLAQVIGDLRKILRL
ARLQQLHAPGRLQQSLAEHLAVFAALRRGDAEAAEQAMRNHLLAQRVALRDIARHHHSRIAP
>Mature_222_residues
MRIPTASLHDNVAERLREQIFAGEFAPGAFLDETALCERLAISRTPLREALKVLTAEGLLRHEPRRGCFVAEVTERDLDE
IFPVIALLEGRAAHEATVRAGMADVAALEVLHERLQEHAAAGRIAEYYAANHAIHEAFIVLADNRWLAQVIGDLRKILRL
ARLQQLHAPGRLQQSLAEHLAVFAALRRGDAEAAEQAMRNHLLAQRVALRDIARHHHSRIAP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=212, Percent_Identity=25, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI48994955, Length=215, Percent_Identity=30.6976744186047, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24751; Mature: 24751

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPTASLHDNVAERLREQIFAGEFAPGAFLDETALCERLAISRTPLREALKVLTAEGLL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RHEPRRGCFVAEVTERDLDEIFPVIALLEGRAAHEATVRAGMADVAALEVLHERLQEHAA
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRIAEYYAANHAIHEAFIVLADNRWLAQVIGDLRKILRLARLQQLHAPGRLQQSLAEHL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AVFAALRRGDAEAAEQAMRNHLLAQRVALRDIARHHHSRIAP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIPTASLHDNVAERLREQIFAGEFAPGAFLDETALCERLAISRTPLREALKVLTAEGLL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RHEPRRGCFVAEVTERDLDEIFPVIALLEGRAAHEATVRAGMADVAALEVLHERLQEHAA
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRIAEYYAANHAIHEAFIVLADNRWLAQVIGDLRKILRLARLQQLHAPGRLQQSLAEHL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AVFAALRRGDAEAAEQAMRNHLLAQRVALRDIARHHHSRIAP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]