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The map label for this gene is ymfK [C]

Identifier: 120599311

GI number: 120599311

Start: 2872587

End: 2873246

Strand: Direct

Name: ymfK [C]

Synonym: Sputw3181_2507

Alternate gene names: 120599311

Gene position: 2872587-2873246 (Clockwise)

Preceding gene: 120599264

Following gene: 120599312

Centisome position: 61.01

GC content: 40.76

Gene sequence:

>660_bases
ATGAAGTGGAATGAGCTGGTTAAATCCAGAATGAAAGAGCTTGGGATTACCCAAGAAAGGCTTGCTGAGTTAGAAGAAGT
AACTCCTGGCGGAATGGGGCATTGGCTTAATGGAAGAAGAGAACCTTCGTTAAGTAAGATCGCATCAATATTAAAGCGTC
TTAATTTAGACTCACTGGTATTGCATTCAGATGGAATGCTTGAATATCCAGACGAAGCGCTAGTTAATGTTAGCAATGCT
AATTTATCTACCAAATACCTAAAAAAATTCCCTGTTATTAGCTATGTAAAAGCGGGGGTTTGGTCAGAGGCCGTTGAGGA
ATCACCAGCATCAGCTTCAGACGAATGGTATGAAACAACCGAAAGAACAAGTGAACATTGTTTTTGGCTGCGGGTGATTG
GTGACTCAATGACATCTCCATCTGGCGTTAGCTTTCCTGAAGGGACATTGATACTTGTTGATCCAGATCGAGATAGGCTG
AATGGGTCATTTGTGGTCGCAAAGCTAACTGATGTTAATGAGGCCACATTTAAAAAGTTGGTAGTGGATGCTGGGCAAAA
GTTCCTTAAGCCACTAAACAACGCATACCCTACGCTACCAATAAATGGGAATTGTAAAATTATTGGTGTTGTTGTGGATG
CTAAAATTAAGATTTTCTAG

Upstream 100 bases:

>100_bases
AATTTTCCATAATGTACATTATGTATATTTCGTTATCAACATAAATGTACATTATGTTTATTGATTGTTTTTGTACATAT
CGTACATTTTAAGGATGAAA

Downstream 100 bases:

>100_bases
CTAGTTATAATTTTAATGATAATGGATTATTACCATGAGAATGATCACTATTTCACTAGTACTGTTTATGCTCGGCGGCT
GCGCCACTTCATCAGTTAGC

Product: putative prophage repressor

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKWNELVKSRMKELGITQERLAELEEVTPGGMGHWLNGRREPSLSKIASILKRLNLDSLVLHSDGMLEYPDEALVNVSNA
NLSTKYLKKFPVISYVKAGVWSEAVEESPASASDEWYETTERTSEHCFWLRVIGDSMTSPSGVSFPEGTLILVDPDRDRL
NGSFVVAKLTDVNEATFKKLVVDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF

Sequences:

>Translated_219_residues
MKWNELVKSRMKELGITQERLAELEEVTPGGMGHWLNGRREPSLSKIASILKRLNLDSLVLHSDGMLEYPDEALVNVSNA
NLSTKYLKKFPVISYVKAGVWSEAVEESPASASDEWYETTERTSEHCFWLRVIGDSMTSPSGVSFPEGTLILVDPDRDRL
NGSFVVAKLTDVNEATFKKLVVDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF
>Mature_219_residues
MKWNELVKSRMKELGITQERLAELEEVTPGGMGHWLNGRREPSLSKIASILKRLNLDSLVLHSDGMLEYPDEALVNVSNA
NLSTKYLKKFPVISYVKAGVWSEAVEESPASASDEWYETTERTSEHCFWLRVIGDSMTSPSGVSFPEGTLILVDPDRDRL
NGSFVVAKLTDVNEATFKKLVVDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=167, Percent_Identity=33.5329341317365, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 24370; Mature: 24370

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWNELVKSRMKELGITQERLAELEEVTPGGMGHWLNGRREPSLSKIASILKRLNLDSLV
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
LHSDGMLEYPDEALVNVSNANLSTKYLKKFPVISYVKAGVWSEAVEESPASASDEWYETT
EECCCCCCCCCHHHEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ERTSEHCFWLRVIGDSMTSPSGVSFPEGTLILVDPDRDRLNGSFVVAKLTDVNEATFKKL
HHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHH
VVDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF
HHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEEEEEEEC
>Mature Secondary Structure
MKWNELVKSRMKELGITQERLAELEEVTPGGMGHWLNGRREPSLSKIASILKRLNLDSLV
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
LHSDGMLEYPDEALVNVSNANLSTKYLKKFPVISYVKAGVWSEAVEESPASASDEWYETT
EECCCCCCCCCHHHEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ERTSEHCFWLRVIGDSMTSPSGVSFPEGTLILVDPDRDRLNGSFVVAKLTDVNEATFKKL
HHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHH
VVDAGQKFLKPLNNAYPTLPINGNCKIIGVVVDAKIKIF
HHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]