Click here to switch to the map view.

The map label for this gene is ybaZ [H]

Identifier: 120599035

GI number: 120599035

Start: 2579753

End: 2580178

Strand: Direct

Name: ybaZ [H]

Synonym: Sputw3181_2231

Alternate gene names: 120599035

Gene position: 2579753-2580178 (Clockwise)

Preceding gene: 120599029

Following gene: 120599036

Centisome position: 54.79

GC content: 43.19

Gene sequence:

>426_bases
ATGTCGCCGTTTTCTAAAGATAAATCTGTGCACTACCCCTATCTGAAACTAGATGAAAAGATTTTAGACACGATACCTAT
GCAAGTAGTGTCGTCCCCTATGGCGAGAATTTGGCATATTGTTGGTATGATCCCAGAGGGAAAGATCAGCAGCTATGGTA
AAATCGCTGATCTTGCAGGCTTACCAGGGCGAGCACGTTATGTATCCAAAGCGCTTAAACTAGCACCAGAGCAGTTATCA
CTGCCTTGGCATAGAGTACTCAATAGCCATGGCAAAATATCCTTCGAACAAAACTCATCCGCGTTTCAAGAACAGATGGA
ATTATTACGAATTGAAGGAATAGTAGTGAACCGAGGCAAAGTTAACTTGTCTGAGTTTGAGTGGCGTCCCGATCTAGCAA
CCTTAGTGATGTCGATGCCATTTTAG

Upstream 100 bases:

>100_bases
ATACGAGCTAACAGCAAGATTTCGCAACTGAGCTATTTAGCGTTAAACTGGCTAACCTAACACTTTAGCAGGTATGAAAT
CTTAATAAGGGCACTTGTTC

Downstream 100 bases:

>100_bases
TTTAATCTACTGAACTATCATCTGGTTACATAGGTTAATCCCTCGGTTATAACCTAAGTTAACGCAATAAATGCTATCTT
TTTAACAATGAAAACTGTGT

Product: methylated-DNA-(protein)-cysteine S-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSPFSKDKSVHYPYLKLDEKILDTIPMQVVSSPMARIWHIVGMIPEGKISSYGKIADLAGLPGRARYVSKALKLAPEQLS
LPWHRVLNSHGKISFEQNSSAFQEQMELLRIEGIVVNRGKVNLSEFEWRPDLATLVMSMPF

Sequences:

>Translated_141_residues
MSPFSKDKSVHYPYLKLDEKILDTIPMQVVSSPMARIWHIVGMIPEGKISSYGKIADLAGLPGRARYVSKALKLAPEQLS
LPWHRVLNSHGKISFEQNSSAFQEQMELLRIEGIVVNRGKVNLSEFEWRPDLATLVMSMPF
>Mature_140_residues
SPFSKDKSVHYPYLKLDEKILDTIPMQVVSSPMARIWHIVGMIPEGKISSYGKIADLAGLPGRARYVSKALKLAPEQLSL
PWHRVLNSHGKISFEQNSSAFQEQMELLRIEGIVVNRGKVNLSEFEWRPDLATLVMSMPF

Specific function: Unknown

COG id: COG3695

COG function: function code L; Predicted methylated DNA-protein cysteine methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MGMT family [H]

Homologues:

Organism=Escherichia coli, GI1786659, Length=111, Percent_Identity=41.4414414414414, Blast_Score=86, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014048
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01035 DNA_binding_1 [H]

EC number: NA

Molecular weight: Translated: 15967; Mature: 15836

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFSKDKSVHYPYLKLDEKILDTIPMQVVSSPMARIWHIVGMIPEGKISSYGKIADLAG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC
LPGRARYVSKALKLAPEQLSLPWHRVLNSHGKISFEQNSSAFQEQMELLRIEGIVVNRGK
CCCHHHHHHHHHHHCHHHHCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCEEEECCC
VNLSEFEWRPDLATLVMSMPF
CCHHHCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
SPFSKDKSVHYPYLKLDEKILDTIPMQVVSSPMARIWHIVGMIPEGKISSYGKIADLAG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC
LPGRARYVSKALKLAPEQLSLPWHRVLNSHGKISFEQNSSAFQEQMELLRIEGIVVNRGK
CCCHHHHHHHHHHHCHHHHCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCEEEECCC
VNLSEFEWRPDLATLVMSMPF
CCHHHCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]