| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599036
Identifier: 120599036
GI number: 120599036
Start: 2580286
End: 2581176
Strand: Direct
Name: 120599036
Synonym: Sputw3181_2232
Alternate gene names: NA
Gene position: 2580286-2581176 (Clockwise)
Preceding gene: 120599035
Following gene: 120599038
Centisome position: 54.8
GC content: 41.86
Gene sequence:
>891_bases ATGCGACTCGACACTTTTTTATCCACTGCGGCACATGTTAGCGCCGTCATACAAGGTGAAAACCTGCGACATAAGGAGCA TTATTTGCGCACCATAACAGCATTATTAATGAGCATTTCCGCACTCTCCCACAGTGTATTTGCCATGGCACCGCCTACGC CACTCACCCCACAAACTGCTGAATATCAGGTCAATTATGGTGATATTCAATTAGGCAAAGCCAAATACGTACTCCCCAGT GCAGAAAACGGCGTATTTAAGTATCGTTTTGATAGCGATCTTAGCCTTTTGCTACTGACCGATGTCCGCCATGTACTGAG TGAATTTACCCAAGAGGAAGGAAAGCTGACTCCACTACGCTATTTACACCAACGTAAAGGTGTTGGCCCTAATTACACTG AGCAAACCGCCTTTGCTAAAGCACAAGGATTTATCCATACCCGATATAAAGACGAGAAAGGTAAGTTTCCCTATGAGGAC GAAATATTCGATCCCCTAATGGTACAACTGCAATTCAGATTGGATATCAGTACAGGCAAAGAAGTGCTCGATTATAAAAT GATCAAGGACAACGAGGTGGATGACTATCAATTTCATGTCATAGGTAAAGAGCGAATGACAATAGAAAGTGGCAGTTATG ACACGGTAAAAATCGAAGTTGTACGCGATAATAAAAAGCGTCAAACTTTTTTTTGGATGGCACCTGACTTAGCTTATCTT CCTGTTCGTTTATCTCATTTTGAAAAAGGCAGTAAGCAGCTTGATATTAAATTACTCAAATATCATTTCGATGAACAACA AGCTGTTACACCCGAACCAACCGAAACACTTACACCACAAGCAGCACCAAAACTCTTAGGGACAACTGACAAAGGGACGA CTGAAAACTAA
Upstream 100 bases:
>100_bases TACTGAACTATCATCTGGTTACATAGGTTAATCCCTCGGTTATAACCTAAGTTAACGCAATAAATGCTATCTTTTTAACA ATGAAAACTGTGTAAGTAAG
Downstream 100 bases:
>100_bases CGGTTTATCTCAATTGCAAAAATTGGGTTAATTCTATAGTGACAAACTCAGTATTGTTAATGCGGAGTTTGTCACCCTCA TTATGCGAATAACTTAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MRLDTFLSTAAHVSAVIQGENLRHKEHYLRTITALLMSISALSHSVFAMAPPTPLTPQTAEYQVNYGDIQLGKAKYVLPS AENGVFKYRFDSDLSLLLLTDVRHVLSEFTQEEGKLTPLRYLHQRKGVGPNYTEQTAFAKAQGFIHTRYKDEKGKFPYED EIFDPLMVQLQFRLDISTGKEVLDYKMIKDNEVDDYQFHVIGKERMTIESGSYDTVKIEVVRDNKKRQTFFWMAPDLAYL PVRLSHFEKGSKQLDIKLLKYHFDEQQAVTPEPTETLTPQAAPKLLGTTDKGTTEN
Sequences:
>Translated_296_residues MRLDTFLSTAAHVSAVIQGENLRHKEHYLRTITALLMSISALSHSVFAMAPPTPLTPQTAEYQVNYGDIQLGKAKYVLPS AENGVFKYRFDSDLSLLLLTDVRHVLSEFTQEEGKLTPLRYLHQRKGVGPNYTEQTAFAKAQGFIHTRYKDEKGKFPYED EIFDPLMVQLQFRLDISTGKEVLDYKMIKDNEVDDYQFHVIGKERMTIESGSYDTVKIEVVRDNKKRQTFFWMAPDLAYL PVRLSHFEKGSKQLDIKLLKYHFDEQQAVTPEPTETLTPQAAPKLLGTTDKGTTEN >Mature_296_residues MRLDTFLSTAAHVSAVIQGENLRHKEHYLRTITALLMSISALSHSVFAMAPPTPLTPQTAEYQVNYGDIQLGKAKYVLPS AENGVFKYRFDSDLSLLLLTDVRHVLSEFTQEEGKLTPLRYLHQRKGVGPNYTEQTAFAKAQGFIHTRYKDEKGKFPYED EIFDPLMVQLQFRLDISTGKEVLDYKMIKDNEVDDYQFHVIGKERMTIESGSYDTVKIEVVRDNKKRQTFFWMAPDLAYL PVRLSHFEKGSKQLDIKLLKYHFDEQQAVTPEPTETLTPQAAPKLLGTTDKGTTEN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33901; Mature: 33901
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLDTFLSTAAHVSAVIQGENLRHKEHYLRTITALLMSISALSHSVFAMAPPTPLTPQTA CCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCC EYQVNYGDIQLGKAKYVLPSAENGVFKYRFDSDLSLLLLTDVRHVLSEFTQEEGKLTPLR EEEEECCCEEECCEEEECCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCHHH YLHQRKGVGPNYTEQTAFAKAQGFIHTRYKDEKGKFPYEDEIFDPLMVQLQFRLDISTGK HHHHHCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCCHHHCCCEEEEEEEEEECCCCC EVLDYKMIKDNEVDDYQFHVIGKERMTIESGSYDTVKIEVVRDNKKRQTFFWMAPDLAYL HHHEEEEECCCCCCCEEEEEECCCEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCEEE PVRLSHFEKGSKQLDIKLLKYHFDEQQAVTPEPTETLTPQAAPKLLGTTDKGTTEN CEEHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC >Mature Secondary Structure MRLDTFLSTAAHVSAVIQGENLRHKEHYLRTITALLMSISALSHSVFAMAPPTPLTPQTA CCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCC EYQVNYGDIQLGKAKYVLPSAENGVFKYRFDSDLSLLLLTDVRHVLSEFTQEEGKLTPLR EEEEECCCEEECCEEEECCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCHHH YLHQRKGVGPNYTEQTAFAKAQGFIHTRYKDEKGKFPYEDEIFDPLMVQLQFRLDISTGK HHHHHCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCCHHHCCCEEEEEEEEEECCCCC EVLDYKMIKDNEVDDYQFHVIGKERMTIESGSYDTVKIEVVRDNKKRQTFFWMAPDLAYL HHHEEEEECCCCCCCEEEEEECCCEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCEEE PVRLSHFEKGSKQLDIKLLKYHFDEQQAVTPEPTETLTPQAAPKLLGTTDKGTTEN CEEHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA