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The map label for this gene is ndpA [C]

Identifier: 120598537

GI number: 120598537

Start: 1979166

End: 1980194

Strand: Direct

Name: ndpA [C]

Synonym: Sputw3181_1720

Alternate gene names: 120598537

Gene position: 1979166-1980194 (Clockwise)

Preceding gene: 120598534

Following gene: 120598539

Centisome position: 42.03

GC content: 45.87

Gene sequence:

>1029_bases
ATGAGTATTAACATCGAACAAGCAATTATTCACGAGATTTCCCAGGACAGTCAGGGGCAGTTGCGTTGCCGTTTACGTCC
TCAACCCCTGCTGAACGGACAAGCGGTCGAGGTGATGCTGGACGAATTGCACCAAACCTATACCAGTAAAGCGGGGAAGG
GATTTGGCTATTTTGGCATTCACGGTGATGATGGCGAAGCCAATCCTGCCTTTGCCAATGCATTAACACAGTACCGTGCT
GGCGAGTTAGGTTTTGTGGAGTTTTCAGGTCAAGCCAGTAAATTGTTGCAGGAAGAATTGGCGAAATATGATTTCAGTCA
AGGTGGATTCCTGCTGATGTCTTGCTACACCAGCATCACCAGCGATTATCTGTTTGTGGCACTCTTGAGCGCAAAATCTT
CCATGACAGTATTGGATGATATGGAGCTTTCACAAAACAACCACTTAGATTTAAACAATATTCAGCTTGCTGCCCGTATT
GATTTGAGCGAATGGCAGGCGGATAAAGATTCTCGTAAGTATATTTCCTTTATCCGCGGCCGCGCGGGGCGTAAAGTTGC
CGACTTCTTCCTCGATTTTATGGGCTGTGTCGAAGGGGTAAACACTAAAGCGCAAAACAAGACACTGATGAATGCGGTTG
AAGATTTTGTTGCTAGTAGCGATCTCACTAAAGATGAGCGTCAGCAGTGCCGTAATAAAGTGTTTGAATATTGCAGTGAG
CGTTTTGACGAAGGTGCAGATATCGAAATCAAAGATTTGGCCGATGAGTTAGCCGATCAAGGTATGGACTCCTTCTACGA
TTTCGCCCGTGGTGGCAGTTATGATCTCGACGAAGAGTTTCCAGCCGATAAATCGACTCTGCGCCAATTGAAGAAATTTT
CAGGCACTGGCGGTGGCGTGACCTTAAGTTTTGATGGCGGTCATTTAGGTCAACGTGTGATCTATGATCCGATTTCAGAC
ACGATTTTAATCAAAGGCGTGCCAGCAAACTTAAAGGATCAACTCGACCGTCGTTTAAAAGGCGAATAG

Upstream 100 bases:

>100_bases
GAGTATTTGGATTGGATTGCCATAATCAAAAAATGTTTCACTTTGGAATGGATTAGCGGCATATAATAGCGGATTTATCC
CAGTATCACTATCAGGGCTT

Downstream 100 bases:

>100_bases
CCTAGATTAATATCTTGTTTTAAAAATAGGCCGAGAATCATTATTCTCGGCCTATTTGCTTTTTTGATTAAACGATTTTT
TTAACCAATTTATTGCGCAC

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEVMLDELHQTYTSKAGKGFGYFGIHGDDGEANPAFANALTQYRA
GELGFVEFSGQASKLLQEELAKYDFSQGGFLLMSCYTSITSDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARI
DLSEWQADKDSRKYISFIRGRAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKDERQQCRNKVFEYCSE
RFDEGADIEIKDLADELADQGMDSFYDFARGGSYDLDEEFPADKSTLRQLKKFSGTGGGVTLSFDGGHLGQRVIYDPISD
TILIKGVPANLKDQLDRRLKGE

Sequences:

>Translated_342_residues
MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEVMLDELHQTYTSKAGKGFGYFGIHGDDGEANPAFANALTQYRA
GELGFVEFSGQASKLLQEELAKYDFSQGGFLLMSCYTSITSDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARI
DLSEWQADKDSRKYISFIRGRAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKDERQQCRNKVFEYCSE
RFDEGADIEIKDLADELADQGMDSFYDFARGGSYDLDEEFPADKSTLRQLKKFSGTGGGVTLSFDGGHLGQRVIYDPISD
TILIKGVPANLKDQLDRRLKGE
>Mature_341_residues
SINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEVMLDELHQTYTSKAGKGFGYFGIHGDDGEANPAFANALTQYRAG
ELGFVEFSGQASKLLQEELAKYDFSQGGFLLMSCYTSITSDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARID
LSEWQADKDSRKYISFIRGRAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKDERQQCRNKVFEYCSER
FDEGADIEIKDLADELADQGMDSFYDFARGGSYDLDEEFPADKSTLRQLKKFSGTGGGVTLSFDGGHLGQRVIYDPISDT
ILIKGVPANLKDQLDRRLKGE

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family [H]

Homologues:

Organism=Escherichia coli, GI1788513, Length=341, Percent_Identity=44.574780058651, Blast_Score=307, Evalue=8e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007358 [H]

Pfam domain/function: PF04245 NA37 [H]

EC number: NA

Molecular weight: Translated: 38088; Mature: 37957

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEVMLDELHQTYTSKAGKGFGYFGI
CCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
HGDDGEANPAFANALTQYRAGELGFVEFSGQASKLLQEELAKYDFSQGGFLLMSCYTSIT
ECCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
SDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARIDLSEWQADKDSRKYISFIRG
HHHHHHHHHHCCCCCEEHHCCCCCCCCCCCCCCEEEEEEECHHHHCCCCHHHHHHHHHHC
RAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKDERQQCRNKVFEYCSE
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RFDEGADIEIKDLADELADQGMDSFYDFARGGSYDLDEEFPADKSTLRQLKKFSGTGGGV
HCCCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
TLSFDGGHLGQRVIYDPISDTILIKGVPANLKDQLDRRLKGE
EEEECCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEVMLDELHQTYTSKAGKGFGYFGI
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
HGDDGEANPAFANALTQYRAGELGFVEFSGQASKLLQEELAKYDFSQGGFLLMSCYTSIT
ECCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
SDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARIDLSEWQADKDSRKYISFIRG
HHHHHHHHHHCCCCCEEHHCCCCCCCCCCCCCCEEEEEEECHHHHCCCCHHHHHHHHHHC
RAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKDERQQCRNKVFEYCSE
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RFDEGADIEIKDLADELADQGMDSFYDFARGGSYDLDEEFPADKSTLRQLKKFSGTGGGV
HCCCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
TLSFDGGHLGQRVIYDPISDTILIKGVPANLKDQLDRRLKGE
EEEECCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA