| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598539
Identifier: 120598539
GI number: 120598539
Start: 1981786
End: 1982667
Strand: Direct
Name: 120598539
Synonym: Sputw3181_1722
Alternate gene names: NA
Gene position: 1981786-1982667 (Clockwise)
Preceding gene: 120598537
Following gene: 120598540
Centisome position: 42.09
GC content: 45.69
Gene sequence:
>882_bases ATGCAACTGTTTGTAAAAGAATTAACTGTGATCGATTTTTCCTACCTTTGCCCTAAGCGTGGCATGGTGGGGGAAAGTTG GATTGTTGATGTACTGCTTGAAGGTGGTCTCGACGAGCAAAATATGGTGCTCGATTTTGCGAAGGTAAAACGTACGATTA AGCAAACGATAGATGCGGTGGCCGATCATCGTTTACTTGTGCCCACTGCGTGCAGCCATGTGCGATGGCAGCAGCAGGGC GATAGAGTATGGATGGATTTTGATAGCGCATTGGGTGAAATCCATTTAGCTTGCCCGTCACAGGCGTTTGCCTTAGTGCC AACAGAACAAATTGATATTCAAAGTGTGAATACCTTTTTACAAAAAGCCCTACGGGAAAGTTTACCTGCCAATGTTGAAG CTATTACGTTGACCCTAAGGCACGAGGTACTCAATTCGCCCTACTATCATTACAGCCATGGTTTACGTAAACATGACGGT AATTGCCAACGTATTGCCCATGGGCATCGTAGTCCTGTGAATGTCTTCGAAAATGGCGTTCCTGCACCTAAGTGGGATGA ATATTGGGCTAAGCGTTGGCATGATATTTACTTGGGTAGTGAAGAAGATGTAGTTTCCGTCAACACCTTAAACCTATCAC CACAAACCCGTATTTCTAATCGTAGCCACTATGGATTTCACTATCAGGCTCCTCAAGGCGATTTTCAGTTGGCAATGCCA AAAGAATGTTGTGATCTGATCCCCCATGACACTACGGTTGAATTGTTAGCCGATTATATGGCAACCACATTGGCGGCTAA AGTGCCCACTAGCCAGTTTACTGTGGTGGCCTATGAGGGCGTTGGTAAGGGGGCCATAGTGACTAAAGGTGTATCCACCT AG
Upstream 100 bases:
>100_bases TCGTGGATGGATTTAACGCCATTCAATCTAGCATGTTTGGCCATTGCTAAGTGGTGCTACCGGATACAAAGGTGGACTGT TTTTCCGCCGAGGAGAGAAA
Downstream 100 bases:
>100_bases TTTAAACACTAGGGTTTGCTGTCGTATTTAATCAACCTAATAAGGATTTTTGTGAAGATGTTTCATTACCTGAAACCACG CAGTCTAGGTCAGTCTTGTG
Product: hypothetical protein
Products: NA
Alternate protein names: 6-Pyruvoyl-Tetrahydropterin Synthase
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MQLFVKELTVIDFSYLCPKRGMVGESWIVDVLLEGGLDEQNMVLDFAKVKRTIKQTIDAVADHRLLVPTACSHVRWQQQG DRVWMDFDSALGEIHLACPSQAFALVPTEQIDIQSVNTFLQKALRESLPANVEAITLTLRHEVLNSPYYHYSHGLRKHDG NCQRIAHGHRSPVNVFENGVPAPKWDEYWAKRWHDIYLGSEEDVVSVNTLNLSPQTRISNRSHYGFHYQAPQGDFQLAMP KECCDLIPHDTTVELLADYMATTLAAKVPTSQFTVVAYEGVGKGAIVTKGVST
Sequences:
>Translated_293_residues MQLFVKELTVIDFSYLCPKRGMVGESWIVDVLLEGGLDEQNMVLDFAKVKRTIKQTIDAVADHRLLVPTACSHVRWQQQG DRVWMDFDSALGEIHLACPSQAFALVPTEQIDIQSVNTFLQKALRESLPANVEAITLTLRHEVLNSPYYHYSHGLRKHDG NCQRIAHGHRSPVNVFENGVPAPKWDEYWAKRWHDIYLGSEEDVVSVNTLNLSPQTRISNRSHYGFHYQAPQGDFQLAMP KECCDLIPHDTTVELLADYMATTLAAKVPTSQFTVVAYEGVGKGAIVTKGVST >Mature_293_residues MQLFVKELTVIDFSYLCPKRGMVGESWIVDVLLEGGLDEQNMVLDFAKVKRTIKQTIDAVADHRLLVPTACSHVRWQQQG DRVWMDFDSALGEIHLACPSQAFALVPTEQIDIQSVNTFLQKALRESLPANVEAITLTLRHEVLNSPYYHYSHGLRKHDG NCQRIAHGHRSPVNVFENGVPAPKWDEYWAKRWHDIYLGSEEDVVSVNTLNLSPQTRISNRSHYGFHYQAPQGDFQLAMP KECCDLIPHDTTVELLADYMATTLAAKVPTSQFTVVAYEGVGKGAIVTKGVST
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32949; Mature: 32949
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLFVKELTVIDFSYLCPKRGMVGESWIVDVLLEGGLDEQNMVLDFAKVKRTIKQTIDAV CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ADHRLLVPTACSHVRWQQQGDRVWMDFDSALGEIHLACPSQAFALVPTEQIDIQSVNTFL HCCEEECCCHHHHHHHHHCCCEEEEEHHHCCCEEEEECCCCCEEECCCCCCCHHHHHHHH QKALRESLPANVEAITLTLRHEVLNSPYYHYSHGLRKHDGNCQRIAHGHRSPVNVFENGV HHHHHHHCCCCCEEEEEEEEHHHHCCCCHHHHCCCCCCCCCHHHHHCCCCCCHHHHHCCC PAPKWDEYWAKRWHDIYLGSEEDVVSVNTLNLSPQTRISNRSHYGFHYQAPQGDFQLAMP CCCCHHHHHHHHHHEEEECCCCCEEEEEEECCCCCHHCCCCCCCCEEEECCCCCEEEECC KECCDLIPHDTTVELLADYMATTLAAKVPTSQFTVVAYEGVGKGAIVTKGVST HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCCC >Mature Secondary Structure MQLFVKELTVIDFSYLCPKRGMVGESWIVDVLLEGGLDEQNMVLDFAKVKRTIKQTIDAV CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ADHRLLVPTACSHVRWQQQGDRVWMDFDSALGEIHLACPSQAFALVPTEQIDIQSVNTFL HCCEEECCCHHHHHHHHHCCCEEEEEHHHCCCEEEEECCCCCEEECCCCCCCHHHHHHHH QKALRESLPANVEAITLTLRHEVLNSPYYHYSHGLRKHDGNCQRIAHGHRSPVNVFENGV HHHHHHHCCCCCEEEEEEEEHHHHCCCCHHHHCCCCCCCCCHHHHHCCCCCCHHHHHCCC PAPKWDEYWAKRWHDIYLGSEEDVVSVNTLNLSPQTRISNRSHYGFHYQAPQGDFQLAMP CCCCHHHHHHHHHHEEEECCCCCEEEEEEECCCCCHHCCCCCCCCEEEECCCCCEEEECC KECCDLIPHDTTVELLADYMATTLAAKVPTSQFTVVAYEGVGKGAIVTKGVST HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA