Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120598517

Identifier: 120598517

GI number: 120598517

Start: 1957976

End: 1958386

Strand: Direct

Name: 120598517

Synonym: Sputw3181_1700

Alternate gene names: NA

Gene position: 1957976-1958386 (Clockwise)

Preceding gene: 120598514

Following gene: 120598518

Centisome position: 41.58

GC content: 44.53

Gene sequence:

>411_bases
ATGAACTCAGTTAAGAAAACCGCCGCCGCAGTTGCATTAGGTACTGTTGTTGTCAGCTCTGCTTTTGCTGTAAACGCACA
AACCAATCCATTTGGTTTTCAAACTATGGATGCCGGCTATCAAGTCGTTGGATCTGAAGGTAAGTGTGGTGAGGGTAAAT
GTGGCGAAGGAATGAAAAAAGCCGCCGATAAAGCTAAAGAAGGCAAATGCGGGGAAGGCAAGTGTGGCGGCGATATGAAA
AAAGCCGTTGATAAAGCTAAAGAAGGCAAATGCGGGGAAGGCAAGTGTGGCGGCGATATGAAAAAAGCCGTTGATAAAGC
CAAAGAAGGCAAATGCGGAGAAGGCAAATGTGGTGGTGATATGAAGAAAGCCGCAGAAAAAGTGGAAGAGGTTAAAAAAG
AAGTAAAATAA

Upstream 100 bases:

>100_bases
TTTTTTGCAATAGAATTGAGTTTCAACAGGTCTCTTGTTACAAACCAGCTACATAAACTGTTGTTGGGCACTTTACACCA
TAAACGACAAGGAAAATATT

Downstream 100 bases:

>100_bases
GTTTCAGCATTTTCAACACTGAACAGGCATTGTGTGGGATGTTGAATAACAAGCCAGCGAGAGCTGGCTTGTACTTTCAA
TGATCTTGATGATATTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MNSVKKTAAAVALGTVVVSSAFAVNAQTNPFGFQTMDAGYQVVGSEGKCGEGKCGEGMKKAADKAKEGKCGEGKCGGDMK
KAVDKAKEGKCGEGKCGGDMKKAVDKAKEGKCGEGKCGGDMKKAAEKVEEVKKEVK

Sequences:

>Translated_136_residues
MNSVKKTAAAVALGTVVVSSAFAVNAQTNPFGFQTMDAGYQVVGSEGKCGEGKCGEGMKKAADKAKEGKCGEGKCGGDMK
KAVDKAKEGKCGEGKCGGDMKKAVDKAKEGKCGEGKCGGDMKKAAEKVEEVKKEVK
>Mature_136_residues
MNSVKKTAAAVALGTVVVSSAFAVNAQTNPFGFQTMDAGYQVVGSEGKCGEGKCGEGMKKAADKAKEGKCGEGKCGGDMK
KAVDKAKEGKCGEGKCGGDMKKAVDKAKEGKCGEGKCGGDMKKAAEKVEEVKKEVK

Specific function: Unknown

COG id: COG3767

COG function: function code S; Uncharacterized low-complexity protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13864; Mature: 13864

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
10.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVKKTAAAVALGTVVVSSAFAVNAQTNPFGFQTMDAGYQVVGSEGKCGEGKCGEGMKK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHH
AADKAKEGKCGEGKCGGDMKKAVDKAKEGKCGEGKCGGDMKKAVDKAKEGKCGEGKCGGD
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
MKKAAEKVEEVKKEVK
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSVKKTAAAVALGTVVVSSAFAVNAQTNPFGFQTMDAGYQVVGSEGKCGEGKCGEGMKK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHH
AADKAKEGKCGEGKCGGDMKKAVDKAKEGKCGEGKCGGDMKKAVDKAKEGKCGEGKCGGD
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
MKKAAEKVEEVKKEVK
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA