| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598518
Identifier: 120598518
GI number: 120598518
Start: 1958466
End: 1959368
Strand: Direct
Name: 120598518
Synonym: Sputw3181_1701
Alternate gene names: NA
Gene position: 1958466-1959368 (Clockwise)
Preceding gene: 120598517
Following gene: 120598519
Centisome position: 41.6
GC content: 42.75
Gene sequence:
>903_bases ATGATCTTGATGATATTGCTGCATGAGATTTGCCTGTTATGGCAAAGAGGTTTTATGAGAAATCCATATCTTGAGCAGGT TGGGCTTGGCCTTCGGCGGGAAATGCTAACGGAGTTTTGCCATCAAGTGCCCAGTACCATTCAATTTTTTGAAGTTGCAC CTGAGAATTGGATGACCCTTGGTGGTAAATATGGCAAGCAGTTTCGTCAGCTTACGGAGCAACATACTTTTTATTGTCAT GGGCTTAGCTTATCCATTGGTAGTCCAGCACCCTTAGATGTCGAGTTTGTTCGCCGTGTAAAGGCCTTTATGGATTTGCA CAAAATTCAAGTGTACTCCGAACATTTAAGTTACTGCTCAGGCCAAGGCCATTTATATGACTTGATGCCTATACCGTTTA CCGATACCGCAGTCAAATATGTGGCAGCACGGGTTAAGCAGGTTGAAGATATCTTAGAGCGACCACTTATTTTAGAAAAT GTCTCTTTTTACGCAGCGCCTGCTGCACAGATGACAGAGCTTCAATTCTTAAATGCAGTACTGGAAGAGGCTGACTGTAA GCTGCTCTTGGATATCAATAATATTTATGTAAACTCGATAAATCATCGCTACGATGCCAATGTCTTTTTAAACGCAATGC CCACTGAGCGTATCGCTTATTTACATATTGCTGGGCACTATAAACAAGCAGAGGATCTGATTATCGATACCCATGGCGCC GATATTAATGATCCCGTGTGGGCACTATTACAAGTTTGCTATGCCAAGCATGGGGTGTTACCGACGTTATTAGAGCGGGA TTTTAATTTACCACCCACCTCTGAGCTATTACGCGAGATTGAACAAATTCATCAACATCAAGCGATTGCGTTTAATTCGG CTGTTGCGAAAAGGAGTGCTTAG
Upstream 100 bases:
>100_bases GTTAAAAAAGAAGTAAAATAAGTTTCAGCATTTTCAACACTGAACAGGCATTGTGTGGGATGTTGAATAACAAGCCAGCG AGAGCTGGCTTGTACTTTCA
Downstream 100 bases:
>100_bases TGAATTTTAAACAGGTTCAGCAGTCTTTTATCGACTATATTCGCGACCCTGCTAAGCCATTACCGGCTGGGACATCCATT GAGCGAATGCAGGTTTACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MILMILLHEICLLWQRGFMRNPYLEQVGLGLRREMLTEFCHQVPSTIQFFEVAPENWMTLGGKYGKQFRQLTEQHTFYCH GLSLSIGSPAPLDVEFVRRVKAFMDLHKIQVYSEHLSYCSGQGHLYDLMPIPFTDTAVKYVAARVKQVEDILERPLILEN VSFYAAPAAQMTELQFLNAVLEEADCKLLLDINNIYVNSINHRYDANVFLNAMPTERIAYLHIAGHYKQAEDLIIDTHGA DINDPVWALLQVCYAKHGVLPTLLERDFNLPPTSELLREIEQIHQHQAIAFNSAVAKRSA
Sequences:
>Translated_300_residues MILMILLHEICLLWQRGFMRNPYLEQVGLGLRREMLTEFCHQVPSTIQFFEVAPENWMTLGGKYGKQFRQLTEQHTFYCH GLSLSIGSPAPLDVEFVRRVKAFMDLHKIQVYSEHLSYCSGQGHLYDLMPIPFTDTAVKYVAARVKQVEDILERPLILEN VSFYAAPAAQMTELQFLNAVLEEADCKLLLDINNIYVNSINHRYDANVFLNAMPTERIAYLHIAGHYKQAEDLIIDTHGA DINDPVWALLQVCYAKHGVLPTLLERDFNLPPTSELLREIEQIHQHQAIAFNSAVAKRSA >Mature_300_residues MILMILLHEICLLWQRGFMRNPYLEQVGLGLRREMLTEFCHQVPSTIQFFEVAPENWMTLGGKYGKQFRQLTEQHTFYCH GLSLSIGSPAPLDVEFVRRVKAFMDLHKIQVYSEHLSYCSGQGHLYDLMPIPFTDTAVKYVAARVKQVEDILERPLILEN VSFYAAPAAQMTELQFLNAVLEEADCKLLLDINNIYVNSINHRYDANVFLNAMPTERIAYLHIAGHYKQAEDLIIDTHGA DINDPVWALLQVCYAKHGVLPTLLERDFNLPPTSELLREIEQIHQHQAIAFNSAVAKRSA
Specific function: Unknown
COG id: COG3220
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0276 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007801 - InterPro: IPR013022 [H]
Pfam domain/function: PF05114 DUF692 [H]
EC number: NA
Molecular weight: Translated: 34399; Mature: 34399
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILMILLHEICLLWQRGFMRNPYLEQVGLGLRREMLTEFCHQVPSTIQFFEVAPENWMTL CHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHC GGKYGKQFRQLTEQHTFYCHGLSLSIGSPAPLDVEFVRRVKAFMDLHKIQVYSEHLSYCS CCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GQGHLYDLMPIPFTDTAVKYVAARVKQVEDILERPLILENVSFYAAPAAQMTELQFLNAV CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHCCCHHHHHHHHHHHHH LEEADCKLLLDINNIYVNSINHRYDANVFLNAMPTERIAYLHIAGHYKQAEDLIIDTHGA HHCCCCEEEEEECCEEEECCCCEECCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCCC DINDPVWALLQVCYAKHGVLPTLLERDFNLPPTSELLREIEQIHQHQAIAFNSAVAKRSA CCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MILMILLHEICLLWQRGFMRNPYLEQVGLGLRREMLTEFCHQVPSTIQFFEVAPENWMTL CHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHC GGKYGKQFRQLTEQHTFYCHGLSLSIGSPAPLDVEFVRRVKAFMDLHKIQVYSEHLSYCS CCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GQGHLYDLMPIPFTDTAVKYVAARVKQVEDILERPLILENVSFYAAPAAQMTELQFLNAV CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHCCCHHHHHHHHHHHHH LEEADCKLLLDINNIYVNSINHRYDANVFLNAMPTERIAYLHIAGHYKQAEDLIIDTHGA HHCCCCEEEEEECCEEEECCCCEECCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCCC DINDPVWALLQVCYAKHGVLPTLLERDFNLPPTSELLREIEQIHQHQAIAFNSAVAKRSA CCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]