| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is prs [H]
Identifier: 120598498
GI number: 120598498
Start: 1939460
End: 1940347
Strand: Direct
Name: prs [H]
Synonym: Sputw3181_1681
Alternate gene names: 120598498
Gene position: 1939460-1940347 (Clockwise)
Preceding gene: 120598497
Following gene: 120598499
Centisome position: 41.19
GC content: 46.51
Gene sequence:
>888_bases ATGTCTCAACGTATTCAAACGTCTCAAGATGCTTCTCACGCTCAATGTTCGCAAGCCGATTTTTATCGGTTACCCGCAGC TAGCGATGAGGCTCACTACCGTTTATTTCAATTTGGTGCGGGGGAAAACCATGTTCAAATACTTGTTCCTCCTGCTAAAC GAGTAACGATCTTTTTCAGTTATCGGGGCGATCATTCCATCATGCAGCTCTTGTTGTTAACTGATGCACTGCGTCGCAGC GGTGCAGAGCAAATCGATCTGTTACTGCCTTATATGCCTGGCGCTCGCCAAGATAGGGTGTGTAATCTGGGTGAAGCCTT GTCGGTAAAAGTCTATGCTAGCCTGATTAATCAGCAGCAATATGCTTCTGTCAGCGTTTTTGACCCTCACAGCGATGTCA CCGCCGCATTGTTAGACCGAGTTCGGGTAATAGATAACCACAGTTTTGTTGCCGCGATCGCAGCCCAATTAACGGGGGAG CTAGTGTTAGTCTCGCCCGATGCGGGGGCGAATAAAAAAGTATTCGGCTTAGCTAAAGCGTTACAGGGAATGCCTGTGAT CAGGGCCGATAAACATCGTGATGTGGTCAATGGCCATATTATCGCTACCGAAGTGTTCTGTGATGACTTGTCGGGTAAAA CCTGCTTAATCGTTGACGATATTTGCGCAGGTGGCAGAACCTTTATTGAACTTGCCATCAAATTAAAGCAAAAGGGGGCC CAAAGCGTCATTTTGATCGTGTCACATTATGAAGATAAGGCCAGTGAGTTGGCACTGCGAGAGGCGGGCATAGACAGATT ATTTTGTACCGATAGTTTAGGTGTCCCTACACATATTTCGAGCGAGTTCTGCCATTGCCATGCTGTTTTGAGTTATATGA ATCATTAA
Upstream 100 bases:
>100_bases AAATCAACTTTACATGATAATGTCTTTAAGACACTATTGTTCATGTAGACAACAAGGGCGCCGTCAATTTCGGCAATCTT GCCACAGACAGGAGGTTACT
Downstream 100 bases:
>100_bases GGAAAATATTATGTACTTGAATCCCGTTACCGCCATTGATGGCTATAAAGTCGACCACCGTCGTCAATATCCCGATAATA CTCAAGTGATTTTTAGTAAC
Product: ribose-phosphate pyrophosphokinase
Products: NA
Alternate protein names: RPPK; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase [H]
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MSQRIQTSQDASHAQCSQADFYRLPAASDEAHYRLFQFGAGENHVQILVPPAKRVTIFFSYRGDHSIMQLLLLTDALRRS GAEQIDLLLPYMPGARQDRVCNLGEALSVKVYASLINQQQYASVSVFDPHSDVTAALLDRVRVIDNHSFVAAIAAQLTGE LVLVSPDAGANKKVFGLAKALQGMPVIRADKHRDVVNGHIIATEVFCDDLSGKTCLIVDDICAGGRTFIELAIKLKQKGA QSVILIVSHYEDKASELALREAGIDRLFCTDSLGVPTHISSEFCHCHAVLSYMNH
Sequences:
>Translated_295_residues MSQRIQTSQDASHAQCSQADFYRLPAASDEAHYRLFQFGAGENHVQILVPPAKRVTIFFSYRGDHSIMQLLLLTDALRRS GAEQIDLLLPYMPGARQDRVCNLGEALSVKVYASLINQQQYASVSVFDPHSDVTAALLDRVRVIDNHSFVAAIAAQLTGE LVLVSPDAGANKKVFGLAKALQGMPVIRADKHRDVVNGHIIATEVFCDDLSGKTCLIVDDICAGGRTFIELAIKLKQKGA QSVILIVSHYEDKASELALREAGIDRLFCTDSLGVPTHISSEFCHCHAVLSYMNH >Mature_294_residues SQRIQTSQDASHAQCSQADFYRLPAASDEAHYRLFQFGAGENHVQILVPPAKRVTIFFSYRGDHSIMQLLLLTDALRRSG AEQIDLLLPYMPGARQDRVCNLGEALSVKVYASLINQQQYASVSVFDPHSDVTAALLDRVRVIDNHSFVAAIAAQLTGEL VLVSPDAGANKKVFGLAKALQGMPVIRADKHRDVVNGHIIATEVFCDDLSGKTCLIVDDICAGGRTFIELAIKLKQKGAQ SVILIVSHYEDKASELALREAGIDRLFCTDSLGVPTHISSEFCHCHAVLSYMNH
Specific function: Utilized by both the de novo and the salvage pathways by which endogenously formed or exogenously added pyrimidine, purine, or pyridine bases are converted to the corresponding ribonucleoside monophosphates. [C]
COG id: COG0462
COG function: function code FE; Phosphoribosylpyrophosphate synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribose-phosphate pyrophosphokinase family [H]
Homologues:
Organism=Escherichia coli, GI1787458, Length=230, Percent_Identity=28.695652173913, Blast_Score=75, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6319403, Length=218, Percent_Identity=29.3577981651376, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320946, Length=232, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6321776, Length=232, Percent_Identity=27.1551724137931, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005946 - InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: =2.7.6.1 [H]
Molecular weight: Translated: 32317; Mature: 32186
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRIQTSQDASHAQCSQADFYRLPAASDEAHYRLFQFGAGENHVQILVPPAKRVTIFFS CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEE YRGDHSIMQLLLLTDALRRSGAEQIDLLLPYMPGARQDRVCNLGEALSVKVYASLINQQQ ECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHH YASVSVFDPHSDVTAALLDRVRVIDNHSFVAAIAAQLTGELVLVSPDAGANKKVFGLAKA HCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH LQGMPVIRADKHRDVVNGHIIATEVFCDDLSGKTCLIVDDICAGGRTFIELAIKLKQKGA HCCCCCEECCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC QSVILIVSHYEDKASELALREAGIDRLFCTDSLGVPTHISSEFCHCHAVLSYMNH CEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SQRIQTSQDASHAQCSQADFYRLPAASDEAHYRLFQFGAGENHVQILVPPAKRVTIFFS CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEE YRGDHSIMQLLLLTDALRRSGAEQIDLLLPYMPGARQDRVCNLGEALSVKVYASLINQQQ ECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHH YASVSVFDPHSDVTAALLDRVRVIDNHSFVAAIAAQLTGELVLVSPDAGANKKVFGLAKA HCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH LQGMPVIRADKHRDVVNGHIIATEVFCDDLSGKTCLIVDDICAGGRTFIELAIKLKQKGA HCCCCCEECCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC QSVILIVSHYEDKASELALREAGIDRLFCTDSLGVPTHISSEFCHCHAVLSYMNH CEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA