| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598499
Identifier: 120598499
GI number: 120598499
Start: 1940358
End: 1941830
Strand: Direct
Name: 120598499
Synonym: Sputw3181_1682
Alternate gene names: NA
Gene position: 1940358-1941830 (Clockwise)
Preceding gene: 120598498
Following gene: 120598505
Centisome position: 41.21
GC content: 44.47
Gene sequence:
>1473_bases ATGTACTTGAATCCCGTTACCGCCATTGATGGCTATAAAGTCGACCACCGTCGTCAATATCCCGATAATACTCAAGTGAT TTTTAGTAACTTAACCGCCCGTAAATCCCGTCGTGGTTATACTGACCAAATGGTGTTTTTTGGCTTGCAATATTTTATCA AGCATTTCTTGATCGACAGTTGGAACCGTGATTTCTTTCAACAACCTAAAGAGCAGGTCATTCGCCAATTCTCCCGCCGT ATCAATAACTATCTCGGGCCGAATAACGTCGGCACTCAGCATATTGAGGAGTTGCATGATTTAGGCTATTTACCCATTAA AATTATGGCATTACCTGAAGGCTCAGTGTATCCATTAAAAGTGCCTTGCTTGATTTTATACAATACTGATGAGCGATTCT TTTGGTTGACTAATTATCTCGAAACTATCCTTTCCGCTAATGTGTGGGGTATGTGTACCAGTGCCACTACCGCGCTGCAA TACCGCAAAATATTTGAGACTTATGCGTTAGAAACCGATGGTGACATCGCTTTTGTTGATTGGCAGGGTCACGATTTTAG TTTCCGTGGCATGTATGGTGCAGAGGCTGCTGTTATGAGCGGCGCCGCCCATTTACTCAGTTTTACTGGGACTGATACCA TACCCGCCATTGATTTTCTTGAACAATATTATCTTGCAGACAGTGATAAGGAACTCGTTGGTGGCAGTGTGGCCGCAACG GAGCACAGTGTGATGTGTGCGGGTGGTATGGAGAATGAATTAGAGACGTTCCGCCGCTTGATCGAAGATATTTATCCTAC GGGCATTGTCAGTATCGTTTCTGATTCTTGGGATTTTTGGCAGGTGATGACAGAGTTCACCTTAGCGTTAAAAGACCGCA TTCTTGCCCGCGATGGCAAAGTGGTGTTTAGGCCCGATACGGGTTGTCCTGTGAAGATCATTTGTGGCGATCCACAAGCA CCAATCGGGAGTCCCGAATATAAAGGCGCTATTGAGTGTCTGTGGGACGTCTTTGGGGGCAGCACAACTGCCAAAGGTTA CAAAGCGCTGAATAGCCATGTTGGACTGATTTATGGCGATTCAATCACCATTGAACGTGCTGAAGCCATTTGTGCCGGCT TAAAGGCCAAAGGTTTTGCGTCAACCAATATTGTGTTTGGGATTGGCAGTTTTACCTATCAACACGTGACCCGAGATACT GACGGTTACGCGGTGAAAGCAACCTTTGCGAAAGTGGATGGCAAAGACAGAGAAATATTTAAAGATCCTAAAACAGATGA TGGCACTAAAAAATCCGCTAAGGGTTTAGTGGCGGTATTTAAAGATGAGCAGGGTCAATTTTATCTTAAAGATCAAGCCA GCTGGCAAGATGTTAACAATTGCGAGTTTGTTCCTGTATTTGCCGATGGTGAACTATTAACGGAATATTCTTTGGCAGAT ATTCGCGCAAGGTTGGCAGAGTCTAGAAGTTGA
Upstream 100 bases:
>100_bases TTATTTTGTACCGATAGTTTAGGTGTCCCTACACATATTTCGAGCGAGTTCTGCCATTGCCATGCTGTTTTGAGTTATAT GAATCATTAAGGAAAATATT
Downstream 100 bases:
>100_bases GCCTATCGATTTTTGATTTTTAACGGCTATCGACAATAGCGAAGATAAAACTGGCAATGCGATTTCTATTAGGGTCATAT TGTCAGTTAAGTTTTACATT
Product: putative nicotinate phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 490; Mature: 490
Protein sequence:
>490_residues MYLNPVTAIDGYKVDHRRQYPDNTQVIFSNLTARKSRRGYTDQMVFFGLQYFIKHFLIDSWNRDFFQQPKEQVIRQFSRR INNYLGPNNVGTQHIEELHDLGYLPIKIMALPEGSVYPLKVPCLILYNTDERFFWLTNYLETILSANVWGMCTSATTALQ YRKIFETYALETDGDIAFVDWQGHDFSFRGMYGAEAAVMSGAAHLLSFTGTDTIPAIDFLEQYYLADSDKELVGGSVAAT EHSVMCAGGMENELETFRRLIEDIYPTGIVSIVSDSWDFWQVMTEFTLALKDRILARDGKVVFRPDTGCPVKIICGDPQA PIGSPEYKGAIECLWDVFGGSTTAKGYKALNSHVGLIYGDSITIERAEAICAGLKAKGFASTNIVFGIGSFTYQHVTRDT DGYAVKATFAKVDGKDREIFKDPKTDDGTKKSAKGLVAVFKDEQGQFYLKDQASWQDVNNCEFVPVFADGELLTEYSLAD IRARLAESRS
Sequences:
>Translated_490_residues MYLNPVTAIDGYKVDHRRQYPDNTQVIFSNLTARKSRRGYTDQMVFFGLQYFIKHFLIDSWNRDFFQQPKEQVIRQFSRR INNYLGPNNVGTQHIEELHDLGYLPIKIMALPEGSVYPLKVPCLILYNTDERFFWLTNYLETILSANVWGMCTSATTALQ YRKIFETYALETDGDIAFVDWQGHDFSFRGMYGAEAAVMSGAAHLLSFTGTDTIPAIDFLEQYYLADSDKELVGGSVAAT EHSVMCAGGMENELETFRRLIEDIYPTGIVSIVSDSWDFWQVMTEFTLALKDRILARDGKVVFRPDTGCPVKIICGDPQA PIGSPEYKGAIECLWDVFGGSTTAKGYKALNSHVGLIYGDSITIERAEAICAGLKAKGFASTNIVFGIGSFTYQHVTRDT DGYAVKATFAKVDGKDREIFKDPKTDDGTKKSAKGLVAVFKDEQGQFYLKDQASWQDVNNCEFVPVFADGELLTEYSLAD IRARLAESRS >Mature_490_residues MYLNPVTAIDGYKVDHRRQYPDNTQVIFSNLTARKSRRGYTDQMVFFGLQYFIKHFLIDSWNRDFFQQPKEQVIRQFSRR INNYLGPNNVGTQHIEELHDLGYLPIKIMALPEGSVYPLKVPCLILYNTDERFFWLTNYLETILSANVWGMCTSATTALQ YRKIFETYALETDGDIAFVDWQGHDFSFRGMYGAEAAVMSGAAHLLSFTGTDTIPAIDFLEQYYLADSDKELVGGSVAAT EHSVMCAGGMENELETFRRLIEDIYPTGIVSIVSDSWDFWQVMTEFTLALKDRILARDGKVVFRPDTGCPVKIICGDPQA PIGSPEYKGAIECLWDVFGGSTTAKGYKALNSHVGLIYGDSITIERAEAICAGLKAKGFASTNIVFGIGSFTYQHVTRDT DGYAVKATFAKVDGKDREIFKDPKTDDGTKKSAKGLVAVFKDEQGQFYLKDQASWQDVNNCEFVPVFADGELLTEYSLAD IRARLAESRS
Specific function: Unknown
COG id: COG1488
COG function: function code H; Nicotinic acid phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAPRTase family [H]
Homologues:
Organism=Homo sapiens, GI5031977, Length=493, Percent_Identity=31.0344827586207, Blast_Score=214, Evalue=1e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015977 - InterPro: IPR016471 - InterPro: IPR002638 [H]
Pfam domain/function: PF04095 NAPRTase [H]
EC number: NA
Molecular weight: Translated: 55063; Mature: 55063
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLNPVTAIDGYKVDHRRQYPDNTQVIFSNLTARKSRRGYTDQMVFFGLQYFIKHFLIDS CCCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC WNRDFFQQPKEQVIRQFSRRINNYLGPNNVGTQHIEELHDLGYLPIKIMALPEGSVYPLK CCHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEE VPCLILYNTDERFFWLTNYLETILSANVWGMCTSATTALQYRKIFETYALETDGDIAFVD EEEEEEEECCCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEE WQGHDFSFRGMYGAEAAVMSGAAHLLSFTGTDTIPAIDFLEQYYLADSDKELVGGSVAAT ECCCCEEECCCCCCHHHHHHCHHHHEEECCCCCCHHHHHHHHHHCCCCCCHHCCCEEEEC EHSVMCAGGMENELETFRRLIEDIYPTGIVSIVSDSWDFWQVMTEFTLALKDRILARDGK CCCEEECCCCHHHHHHHHHHHHHHCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCC VVFRPDTGCPVKIICGDPQAPIGSPEYKGAIECLWDVFGGSTTAKGYKALNSHVGLIYGD EEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCEEEEECC SITIERAEAICAGLKAKGFASTNIVFGIGSFTYQHVTRDTDGYAVKATFAKVDGKDREIF CEEEHHHHHHHHCCCCCCCCCCEEEEEECCCEEHHHCCCCCCEEEEEEEEECCCCCHHHH KDPKTDDGTKKSAKGLVAVFKDEQGQFYLKDQASWQDVNNCEFVPVFADGELLTEYSLAD CCCCCCCCCCHHCCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHH IRARLAESRS HHHHHHHCCC >Mature Secondary Structure MYLNPVTAIDGYKVDHRRQYPDNTQVIFSNLTARKSRRGYTDQMVFFGLQYFIKHFLIDS CCCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC WNRDFFQQPKEQVIRQFSRRINNYLGPNNVGTQHIEELHDLGYLPIKIMALPEGSVYPLK CCHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEE VPCLILYNTDERFFWLTNYLETILSANVWGMCTSATTALQYRKIFETYALETDGDIAFVD EEEEEEEECCCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEE WQGHDFSFRGMYGAEAAVMSGAAHLLSFTGTDTIPAIDFLEQYYLADSDKELVGGSVAAT ECCCCEEECCCCCCHHHHHHCHHHHEEECCCCCCHHHHHHHHHHCCCCCCHHCCCEEEEC EHSVMCAGGMENELETFRRLIEDIYPTGIVSIVSDSWDFWQVMTEFTLALKDRILARDGK CCCEEECCCCHHHHHHHHHHHHHHCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCC VVFRPDTGCPVKIICGDPQAPIGSPEYKGAIECLWDVFGGSTTAKGYKALNSHVGLIYGD EEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCEEEEECC SITIERAEAICAGLKAKGFASTNIVFGIGSFTYQHVTRDTDGYAVKATFAKVDGKDREIF CEEEHHHHHHHHCCCCCCCCCCEEEEEECCCEEHHHCCCCCCEEEEEEEEECCCCCHHHH KDPKTDDGTKKSAKGLVAVFKDEQGQFYLKDQASWQDVNNCEFVPVFADGELLTEYSLAD CCCCCCCCCCHHCCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHH IRARLAESRS HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]