Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 120598190

GI number: 120598190

Start: 1554618

End: 1555757

Strand: Direct

Name: cydB [H]

Synonym: Sputw3181_1367

Alternate gene names: 120598190

Gene position: 1554618-1555757 (Clockwise)

Preceding gene: 120598189

Following gene: 120598191

Centisome position: 33.02

GC content: 44.82

Gene sequence:

>1140_bases
ATGTTTGATTATGAAATATTAAGAGTAATCTGGTGGGCTCTGATCGGCGTACTGTTCATCGGATTTGCGGTTACTGACGG
TTTTGATATGGGTGTCGGTGCGTTACTACCAATTATAGGTAAAGACGATACCGAGCGCCGTATTATGGTCAATACGATTG
CCCCCCATTGGGATGGTAACCAAGTATGGCTAATCACCGCTGGTGGTGCGTTATTTGCCGCTTGGCCAACAGTGTATGCA
GTGTCTTTCTCTGGCTTCTATGTGGCTATGATGTTAGTGCTGTTTGCCCTATACATGCGTCCTGTGGGATTTGACTATCG
TTCAAAAATCGAGGATCCAAAATGGCGTAAGTCATGGGATTGGGCTCTATTTGCGGGTGGTTTTATTCCTCCACTGATCA
TTGGTGTTGCCTTTGGTAACTTATTGCAAGGTGTTCCATTTAACTTTGATGAGTTCCTGCGTGCAAAATACCACGGCGGT
TTATTTGGCTTACTAAACCCATTTGGTTTACTGGCAGGTCTTGTAAGCGTGAGCATGTTTATGATGCAAGGCGCTTCATG
GTTACAAATGAAGACCGATGGTGAACTGCGTGTTCGAGCGGCGAAAGCAACTCAATTCTTTGCGTTATTAGTGGCAGTGT
TGTTTGCTGCTGCTGGTGTGTGGTTAGCCAATGGTATTGACGGTTATGTTGTGACTTCGGCACTTGATCACAATGCGGTA
TCGAACCCAACGATGAAAACAGTAGCGGTTGAGGCTGGAGCATGGTTAGCAAACTATGACAAATACCCCATCACTATGCT
GTTCCCTATCTTAGGTGTGGTATTACCCCTGTTGGTGATTTTGGTTAGCCGCTTTAACCGTTCTGGTTTTGCATTCCTAT
TCAGCTCACTGACTGTGGCTATGGTGATTTTGACTTGTGGTGCGGCTATGTTCCCATTTGTCATGCCATCATCATTAGAT
CCTAATGTGAGTTTGACTATGTGGGATGCTACGGCCAGTGAGAAGACCTTAGGTGTAATGACAGGTGCAGCCGCGATTTT
TGTGCCTATCGTATTAAGTTACACTGTCTGGACTTACTTCAAAATGTTTGGCCGTATTGGCCGTAAACATATTGAAGATA
ACAAAGCCTCACTCTATTAA

Upstream 100 bases:

>100_bases
GATGTTCCTGATGTTTAAGTTTGCCCGCCTTGGTCCGAGCAGTTTAAAAACTGGTCGTTATCATTTCGAGAAACTAGAAG
CCTAAGCAGAGGATTTCATT

Downstream 100 bases:

>100_bases
TGTTTACGAAGAATTAAGGAGCATCTGCTATGTGGTATTTTACGTGGATATTAGGGGTTTTGTTGGCCTGTTCTTTCGGG
ATTATCAATGCCCTGTGGCT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGNQVWLITAGGALFAAWPTVYA
VSFSGFYVAMMLVLFALYMRPVGFDYRSKIEDPKWRKSWDWALFAGGFIPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGG
LFGLLNPFGLLAGLVSVSMFMMQGASWLQMKTDGELRVRAAKATQFFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV
SNPTMKTVAVEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASEKTLGVMTGAAAIFVPIVLSYTVWTYFKMFGRIGRKHIEDNKASLY

Sequences:

>Translated_379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGNQVWLITAGGALFAAWPTVYA
VSFSGFYVAMMLVLFALYMRPVGFDYRSKIEDPKWRKSWDWALFAGGFIPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGG
LFGLLNPFGLLAGLVSVSMFMMQGASWLQMKTDGELRVRAAKATQFFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV
SNPTMKTVAVEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASEKTLGVMTGAAAIFVPIVLSYTVWTYFKMFGRIGRKHIEDNKASLY
>Mature_379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGNQVWLITAGGALFAAWPTVYA
VSFSGFYVAMMLVLFALYMRPVGFDYRSKIEDPKWRKSWDWALFAGGFIPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGG
LFGLLNPFGLLAGLVSVSMFMMQGASWLQMKTDGELRVRAAKATQFFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV
SNPTMKTVAVEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASEKTLGVMTGAAAIFVPIVLSYTVWTYFKMFGRIGRKHIEDNKASLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=66.2269129287599, Blast_Score=515, Evalue=1e-147,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=53.5620052770449, Blast_Score=413, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41745; Mature: 41745

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPTVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIEDPKWRKSWD
EEEEEEECCHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCC
WALFAGGFIPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGGLFGLLNPFGLLAGLVSVSMF
CCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGASWLQMKTDGELRVRAAKATQFFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV
HHCCCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCC
SNPTMKTVAVEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVA
CCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEKTLGVMTGAAAIFVPIVLSYTVWTYF
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRIGRKHIEDNKASLY
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPTVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIEDPKWRKSWD
EEEEEEECCHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCC
WALFAGGFIPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGGLFGLLNPFGLLAGLVSVSMF
CCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGASWLQMKTDGELRVRAAKATQFFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV
HHCCCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCC
SNPTMKTVAVEAGAWLANYDKYPITMLFPILGVVLPLLVILVSRFNRSGFAFLFSSLTVA
CCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEKTLGVMTGAAAIFVPIVLSYTVWTYF
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRIGRKHIEDNKASLY
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]