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The map label for this gene is cydA [H]

Identifier: 120598189

GI number: 120598189

Start: 1553046

End: 1554602

Strand: Direct

Name: cydA [H]

Synonym: Sputw3181_1366

Alternate gene names: 120598189

Gene position: 1553046-1554602 (Clockwise)

Preceding gene: 120598188

Following gene: 120598190

Centisome position: 32.98

GC content: 43.22

Gene sequence:

>1557_bases
ATGATTGTTGAAGAGGTTGTTGAGCTATCGCGGTTGCAGTTTGCGCTGACAGCCATGTATCACTTCCTATTTGTTCCTTT
AACTTTAGGGTTAGCATTTTTGCTGGCTATCATGGAATCACTCTATGTGATGACTGATAAACAAATTTATAAAGATATGA
CTAAGTTCTGGGGTAAGTTATTTGGTATTAACTTTGCCTTGGGTGTTTCAACGGGCTTGGCGATGGAGTTCCAGTTTGGT
ACTAACTGGTCTTATTATTCGCATTATGTTGGTGACATCTTTGGTGCACCACTTGCCATTGAAGGTTTAATGGCCTTCTT
CCTTGAATCTACCTTCGTAGGTATGTTCTTCTTCGGTTGGGATCGTTTCACTAAGCGCCAACATTTAGCTGTGACTTGGT
TAGTTGCCTTTGGTTCTAACTTATCAGCGCTATGGATTTTGGTTGCTAATGGTTGGATGCAAAATCCAGTGGGCAGCGTA
TTCAATTACGAAACCATGCGTATGGAAATGACCAGTTTTGCTGAAGTGGTCTTTAACCCCGTTGCACAGGTGAAATTTGT
TCACACTGTGGCTTCTGGTTATGTGACGGGTGCTATGTTTGTGTTAGCGATCAGTGCTTACTACATTCTTAAAAAACGTG
ACTTACCTTTTGCCCGCCGTTCGTTTGCGATTGCGGCAAGTTTTGGTATGGCATCGATCCTGTCTGTTATCGTTTTAGGT
GATGAATCAGGCTATAAAGTGGGTGAAGCTCAGCGCGTTAAGTTAGCTGCGATTGAAGCTGAATGGCACACAGAGCCTGC
ACCAGCAGCCTTTACTGCGATAGGTTTCCCTAATCAAGAAACGATGGAAACTGATTTTGCAGTCAAGATCCCTTATGCAA
TGGGTATTGTTGCGACTCGTTCATTGGATGAGGAAGTAACAGGTATTCATGACTTGATTGCTGAGCACGAAGTGCGTATT
CGTAACGGTATGAAAGCCTATGAGATGTTGGTGAAATTGCGTGCAGGTGAAGAAACCCCTGAACTACGTGCTGCTTTTGA
AACGGCTAAAGTGGACTTAGGATACGGTTTCTTACTCAAACGCTATACCGATAACATTGTCGATGCGACTGAAGAACAAA
TTAAAGCGGCTGCTAAGGATTCTATCCCAAGTGTTGCGCCTATGTTCTGGAGTTTCCGTATCATGGTGGGATTAGGTTTT
GTCATGCTGTTTGTGTTTGCAGCGGCATTCTGGCAAAGCACTCGTCATCAAATTGAAGAGAAAAAATGGGTGCTTAAGGC
TGCGCTTTATAGCTTACCATTACCTTGGATCGCCATTGAATGCGGTTGGTTTGTGGCTGAATACGGTCGTCAACCTTGGA
CAATTTCTGAAGTCTTGCCAACCTTTATGTCTGCGTCGAGTTTAACGACGGGTGATTTATGGTTCAGTATCCTCTCTATC
ACACTTTTCTACACAATCTTGTTAGTGATTGAGATGTTCCTGATGTTTAAGTTTGCCCGCCTTGGTCCGAGCAGTTTAAA
AACTGGTCGTTATCATTTCGAGAAACTAGAAGCCTAA

Upstream 100 bases:

>100_bases
ATATAAACACAAAATGAAACTCACTATCCTACAAAGGCACTTGCTATAAACAATTCGGATTTCGTTGTAGCAATTGGACG
CACCACGTAAGGAGTTACCG

Downstream 100 bases:

>100_bases
GCAGAGGATTTCATTATGTTTGATTATGAAATATTAAGAGTAATCTGGTGGGCTCTGATCGGCGTACTGTTCATCGGATT
TGCGGTTACTGACGGTTTTG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVSTGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRFTKRQHLAVTWLVAFGSNLSALWILVANGWMQNPVGSV
FNYETMRMEMTSFAEVVFNPVAQVKFVHTVASGYVTGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAIGFPNQETMETDFAVKIPYAMGIVATRSLDEEVTGIHDLIAEHEVRI
RNGMKAYEMLVKLRAGEETPELRAAFETAKVDLGYGFLLKRYTDNIVDATEEQIKAAAKDSIPSVAPMFWSFRIMVGLGF
VMLFVFAAAFWQSTRHQIEEKKWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSILSI
TLFYTILLVIEMFLMFKFARLGPSSLKTGRYHFEKLEA

Sequences:

>Translated_518_residues
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVSTGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRFTKRQHLAVTWLVAFGSNLSALWILVANGWMQNPVGSV
FNYETMRMEMTSFAEVVFNPVAQVKFVHTVASGYVTGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAIGFPNQETMETDFAVKIPYAMGIVATRSLDEEVTGIHDLIAEHEVRI
RNGMKAYEMLVKLRAGEETPELRAAFETAKVDLGYGFLLKRYTDNIVDATEEQIKAAAKDSIPSVAPMFWSFRIMVGLGF
VMLFVFAAAFWQSTRHQIEEKKWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSILSI
TLFYTILLVIEMFLMFKFARLGPSSLKTGRYHFEKLEA
>Mature_518_residues
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVSTGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRFTKRQHLAVTWLVAFGSNLSALWILVANGWMQNPVGSV
FNYETMRMEMTSFAEVVFNPVAQVKFVHTVASGYVTGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAIGFPNQETMETDFAVKIPYAMGIVATRSLDEEVTGIHDLIAEHEVRI
RNGMKAYEMLVKLRAGEETPELRAAFETAKVDLGYGFLLKRYTDNIVDATEEQIKAAAKDSIPSVAPMFWSFRIMVGLGF
VMLFVFAAAFWQSTRHQIEEKKWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSILSI
TLFYTILLVIEMFLMFKFARLGPSSLKTGRYHFEKLEA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=511, Percent_Identity=73.1898238747554, Blast_Score=796, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=60.7142857142857, Blast_Score=635, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58451; Mature: 58451

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFALGVSTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGW
HCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRFTKRQHLAVTWLVAFGSNLSALWILVANGWMQNPVGSVFNYETMRMEMTSFAEVVFNP
HHHCCCHHHHEEEEEHHCCCCCEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHH
VAQVKFVHTVASGYVTGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAIGFPNQETMETDFAVKIPYAMGIVATR
CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEECCHHHHHHHHC
SLDEEVTGIHDLIAEHEVRIRNGMKAYEMLVKLRAGEETPELRAAFETAKVDLGYGFLLK
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCHHHHHH
RYTDNIVDATEEQIKAAAKDSIPSVAPMFWSFRIMVGLGFVMLFVFAAAFWQSTRHQIEE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSILSI
HHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
TLFYTILLVIEMFLMFKFARLGPSSLKTGRYHFEKLEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFALGVSTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGW
HCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRFTKRQHLAVTWLVAFGSNLSALWILVANGWMQNPVGSVFNYETMRMEMTSFAEVVFNP
HHHCCCHHHHEEEEEHHCCCCCEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHH
VAQVKFVHTVASGYVTGAMFVLAISAYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAIGFPNQETMETDFAVKIPYAMGIVATR
CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEECCHHHHHHHHC
SLDEEVTGIHDLIAEHEVRIRNGMKAYEMLVKLRAGEETPELRAAFETAKVDLGYGFLLK
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCHHHHHH
RYTDNIVDATEEQIKAAAKDSIPSVAPMFWSFRIMVGLGFVMLFVFAAAFWQSTRHQIEE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWVLKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSILSI
HHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
TLFYTILLVIEMFLMFKFARLGPSSLKTGRYHFEKLEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]