| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is glsA [H]
Identifier: 120598137
GI number: 120598137
Start: 1496466
End: 1497380
Strand: Direct
Name: glsA [H]
Synonym: Sputw3181_1314
Alternate gene names: 120598137
Gene position: 1496466-1497380 (Clockwise)
Preceding gene: 120598136
Following gene: 120598138
Centisome position: 31.78
GC content: 46.34
Gene sequence:
>915_bases ATGCCCGAGTTGGCATTACTTGAGGAAGTGGTCGAGAAAGTTCGACCCTTGCTCGGCCAAGGAAAAGTTGCAAATTATAT CCCCGCACTGGCTAGCGTTGATGCTGGCAAATTAGGCATTGCCGTCACGACTGTTGATGGTGAAACTTTAGGTGCGGGCG ATTACCTTGAGCCGTTTTCGATTCAAAGTATCTCTAAAGTTTTCAGCTTAACCTTAGCGTTAACTTTATATGAAGAAGCC GAAATCTGGAGCCGTGTTGGCAAAGAACCTTCGGGCCATTCCTTCAATTCTCTTGTTCAAGTCGAGTTAGAACGTGGCAA GCCGCGCAATCCCTTTATCAATGCTGGCGCGTTAGTGATTGCTGACTTATTGCAGAGCCGTTTAGGTGCGCCTAAACACA GAATGCTTGAGTTAGTTAGGCAACTCAGCCAAAACGATAAAGTGTGTTTTGATAAACAAGTGGCAGATTCAGAATATCAG CATAGTGCGCGCAATGCGGCTATCGCTTATTTGATGAAGTCGTTTGGTAATTTTCAAGGCGATGTTGATACTGTGCTGCG CACTTATTTTCATTACTGCGCCCTAAAAATGAATTGTGCTGATTTATCTAGGGCCATGTTGTATTTGGCGAATCGCGGCA AAACTGTGGATGGCACTGAGCTGATTTCTCAAGTTCAAACTCGGCAACTTAACGCTCTGTTGGCCACCTCGGGCTTATAT GATGGCGCGGGTGAATTTGCTTATCGTGTTGGTATGCCTGGTAAAAGTGGCGTCGGTGGCGGTATTATTGCGGTTATCCC TGGCGAGTTATCGATTTGTGTTTGGTCACCAGAGCTTGATGAGAATGGCAACTCACTTGCGGGTACTGCTATGCTTGAGC ATCTAAGTCAGCGTCTTGGGCGCTCTATTTTCTAG
Upstream 100 bases:
>100_bases AATGTACCGAAGAAGATATTGCTGCAGTTAAGGCATTCTGGGCGACTCAAAAAGTGTCCCAGGTTGAAGTTAGCGAACTG TACGATATTTGGTGGGGTTA
Downstream 100 bases:
>100_bases CTTCCCTCGTTTTTATTAGCGCTATTAAGCTAAAACTAGCGAATTTCGCCATGTTAGCATTAGCGCTAACTTTTCTATAT TCATCATAATCAATACGTTA
Product: glutaminase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MPELALLEEVVEKVRPLLGQGKVANYIPALASVDAGKLGIAVTTVDGETLGAGDYLEPFSIQSISKVFSLTLALTLYEEA EIWSRVGKEPSGHSFNSLVQVELERGKPRNPFINAGALVIADLLQSRLGAPKHRMLELVRQLSQNDKVCFDKQVADSEYQ HSARNAAIAYLMKSFGNFQGDVDTVLRTYFHYCALKMNCADLSRAMLYLANRGKTVDGTELISQVQTRQLNALLATSGLY DGAGEFAYRVGMPGKSGVGGGIIAVIPGELSICVWSPELDENGNSLAGTAMLEHLSQRLGRSIF
Sequences:
>Translated_304_residues MPELALLEEVVEKVRPLLGQGKVANYIPALASVDAGKLGIAVTTVDGETLGAGDYLEPFSIQSISKVFSLTLALTLYEEA EIWSRVGKEPSGHSFNSLVQVELERGKPRNPFINAGALVIADLLQSRLGAPKHRMLELVRQLSQNDKVCFDKQVADSEYQ HSARNAAIAYLMKSFGNFQGDVDTVLRTYFHYCALKMNCADLSRAMLYLANRGKTVDGTELISQVQTRQLNALLATSGLY DGAGEFAYRVGMPGKSGVGGGIIAVIPGELSICVWSPELDENGNSLAGTAMLEHLSQRLGRSIF >Mature_303_residues PELALLEEVVEKVRPLLGQGKVANYIPALASVDAGKLGIAVTTVDGETLGAGDYLEPFSIQSISKVFSLTLALTLYEEAE IWSRVGKEPSGHSFNSLVQVELERGKPRNPFINAGALVIADLLQSRLGAPKHRMLELVRQLSQNDKVCFDKQVADSEYQH SARNAAIAYLMKSFGNFQGDVDTVLRTYFHYCALKMNCADLSRAMLYLANRGKTVDGTELISQVQTRQLNALLATSGLYD GAGEFAYRVGMPGKSGVGGGIIAVIPGELSICVWSPELDENGNSLAGTAMLEHLSQRLGRSIF
Specific function: Unknown
COG id: COG2066
COG function: function code E; Glutaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutaminase family [H]
Homologues:
Organism=Homo sapiens, GI156104878, Length=294, Percent_Identity=35.0340136054422, Blast_Score=172, Evalue=3e-43, Organism=Homo sapiens, GI20336214, Length=294, Percent_Identity=33.3333333333333, Blast_Score=158, Evalue=4e-39, Organism=Escherichia coli, GI1787804, Length=301, Percent_Identity=63.4551495016611, Blast_Score=411, Evalue=1e-116, Organism=Escherichia coli, GI1786693, Length=289, Percent_Identity=35.9861591695502, Blast_Score=176, Evalue=2e-45, Organism=Caenorhabditis elegans, GI17507019, Length=296, Percent_Identity=36.1486486486487, Blast_Score=184, Evalue=7e-47, Organism=Caenorhabditis elegans, GI17532727, Length=297, Percent_Identity=32.6599326599327, Blast_Score=169, Evalue=2e-42, Organism=Caenorhabditis elegans, GI193204073, Length=310, Percent_Identity=33.2258064516129, Blast_Score=159, Evalue=1e-39, Organism=Caenorhabditis elegans, GI193204075, Length=312, Percent_Identity=33.0128205128205, Blast_Score=159, Evalue=2e-39, Organism=Drosophila melanogaster, GI24653164, Length=285, Percent_Identity=34.7368421052632, Blast_Score=168, Evalue=4e-42, Organism=Drosophila melanogaster, GI281363241, Length=285, Percent_Identity=34.7368421052632, Blast_Score=168, Evalue=4e-42, Organism=Drosophila melanogaster, GI24653166, Length=285, Percent_Identity=34.7368421052632, Blast_Score=168, Evalue=5e-42, Organism=Drosophila melanogaster, GI24653162, Length=285, Percent_Identity=34.7368421052632, Blast_Score=168, Evalue=5e-42, Organism=Drosophila melanogaster, GI281363239, Length=285, Percent_Identity=34.7368421052632, Blast_Score=168, Evalue=5e-42, Organism=Drosophila melanogaster, GI24653158, Length=285, Percent_Identity=34.7368421052632, Blast_Score=168, Evalue=5e-42, Organism=Drosophila melanogaster, GI24653156, Length=285, Percent_Identity=34.7368421052632, Blast_Score=168, Evalue=5e-42, Organism=Drosophila melanogaster, GI116008307, Length=285, Percent_Identity=34.7368421052632, Blast_Score=167, Evalue=6e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR015868 [H]
Pfam domain/function: PF04960 Glutaminase [H]
EC number: =3.5.1.2 [H]
Molecular weight: Translated: 32911; Mature: 32780
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPELALLEEVVEKVRPLLGQGKVANYIPALASVDAGKLGIAVTTVDGETLGAGDYLEPFS CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCH IQSISKVFSLTLALTLYEEAEIWSRVGKEPSGHSFNSLVQVELERGKPRNPFINAGALVI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHH ADLLQSRLGAPKHRMLELVRQLSQNDKVCFDKQVADSEYQHSARNAAIAYLMKSFGNFQG HHHHHHHHCCCHHHHHHHHHHHCCCCCEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCC DVDTVLRTYFHYCALKMNCADLSRAMLYLANRGKTVDGTELISQVQTRQLNALLATSGLY CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC DGAGEFAYRVGMPGKSGVGGGIIAVIPGELSICVWSPELDENGNSLAGTAMLEHLSQRLG CCCCCCEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC RSIF CCCC >Mature Secondary Structure PELALLEEVVEKVRPLLGQGKVANYIPALASVDAGKLGIAVTTVDGETLGAGDYLEPFS CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCH IQSISKVFSLTLALTLYEEAEIWSRVGKEPSGHSFNSLVQVELERGKPRNPFINAGALVI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHH ADLLQSRLGAPKHRMLELVRQLSQNDKVCFDKQVADSEYQHSARNAAIAYLMKSFGNFQG HHHHHHHHCCCHHHHHHHHHHHCCCCCEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCC DVDTVLRTYFHYCALKMNCADLSRAMLYLANRGKTVDGTELISQVQTRQLNALLATSGLY CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC DGAGEFAYRVGMPGKSGVGGGIIAVIPGELSICVWSPELDENGNSLAGTAMLEHLSQRLG CCCCCCEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC RSIF CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA