| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yggL [H]
Identifier: 120598136
GI number: 120598136
Start: 1496140
End: 1496466
Strand: Direct
Name: yggL [H]
Synonym: Sputw3181_1313
Alternate gene names: 120598136
Gene position: 1496140-1496466 (Clockwise)
Preceding gene: 120598135
Following gene: 120598137
Centisome position: 31.78
GC content: 44.95
Gene sequence:
>327_bases ATGGCAACTAATCGTAGCCGTCGTTTACGTAAGAAAATGCGCGTCGATGAATTCCAAGAGTTAGGTTTTGATATGACTTG GACTTTTGATGCATCTGTATCTGAAGCCGATATCGATGCAACGGTAGATAAATTTATCGACGAAGTGATCGAAGCCCGCA AATTAGGTTTTCACGGCGGCGGCCACATCGAATGGGAAGGCATTATCGCCACCCAAACGATTGGCAAATGTACCGAAGAA GATATTGCTGCAGTTAAGGCATTCTGGGCGACTCAAAAAGTGTCCCAGGTTGAAGTTAGCGAACTGTACGATATTTGGTG GGGTTAA
Upstream 100 bases:
>100_bases CCATAGATTGGGTCACGGTGTATGGGATCTGATGTTTGAGCGTATCGTTTAATCACGAACTCAATTTTAGCTAATTTTAA ACACAAAAGGGAAAATCACT
Downstream 100 bases:
>100_bases TGCCCGAGTTGGCATTACTTGAGGAAGTGGTCGAGAAAGTTCGACCCTTGCTCGGCCAAGGAAAAGTTGCAAATTATATC CCCGCACTGGCTAGCGTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MATNRSRRLRKKMRVDEFQELGFDMTWTFDASVSEADIDATVDKFIDEVIEARKLGFHGGGHIEWEGIIATQTIGKCTEE DIAAVKAFWATQKVSQVEVSELYDIWWG
Sequences:
>Translated_108_residues MATNRSRRLRKKMRVDEFQELGFDMTWTFDASVSEADIDATVDKFIDEVIEARKLGFHGGGHIEWEGIIATQTIGKCTEE DIAAVKAFWATQKVSQVEVSELYDIWWG >Mature_107_residues ATNRSRRLRKKMRVDEFQELGFDMTWTFDASVSEADIDATVDKFIDEVIEARKLGFHGGGHIEWEGIIATQTIGKCTEED IAAVKAFWATQKVSQVEVSELYDIWWG
Specific function: Unknown
COG id: COG3171
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0341 [H]
Homologues:
Organism=Escherichia coli, GI87082190, Length=107, Percent_Identity=57.9439252336449, Blast_Score=132, Evalue=7e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007416 [H]
Pfam domain/function: PF04320 DUF469 [H]
EC number: NA
Molecular weight: Translated: 12359; Mature: 12228
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATNRSRRLRKKMRVDEFQELGFDMTWTFDASVSEADIDATVDKFIDEVIEARKLGFHGG CCCCHHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC GHIEWEGIIATQTIGKCTEEDIAAVKAFWATQKVSQVEVSELYDIWWG CEEEECEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ATNRSRRLRKKMRVDEFQELGFDMTWTFDASVSEADIDATVDKFIDEVIEARKLGFHGG CCCHHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC GHIEWEGIIATQTIGKCTEEDIAAVKAFWATQKVSQVEVSELYDIWWG CEEEECEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 2001994 [H]