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The map label for this gene is deoB [H]

Identifier: 120598014

GI number: 120598014

Start: 1342081

End: 1343295

Strand: Direct

Name: deoB [H]

Synonym: Sputw3181_1191

Alternate gene names: 120598014

Gene position: 1342081-1343295 (Clockwise)

Preceding gene: 120598013

Following gene: 120598015

Centisome position: 28.5

GC content: 47.33

Gene sequence:

>1215_bases
ATGAAACGTACCATTATTATGATGTTGGACTCCTTTGGAGTCGGTGCTTCTGCTGATGCAGCAAGCTTTGGTGATGTCGG
TTCCGATACCTTTGGTCATATTGCTAAAGCGTGCGCTGAAGGCAAAGCCGATATAGGCCGAGAAGGCCCACTTAAATTAC
CTAATTTAGCGCGCTTAGGCTTAGGCCATGCGGCGATGGAAAGTACGGGAGCCTTTGCGCCTGGTTTTGGCGACAATGTT
GAGCTGATTGGTGCTTATGGTCACGCTCAAGAGTTAAGTTCAGGTAAAGATACCCCGAGCGGCCACTGGGAGATGGCGGG
GGTTCCCGTGCTATTCGAGTGGGGCTATTTCAGCGAGCATCAAAATTCTTTCCCTAAAGAATTGACGGATAAAATCTTAG
CAAGAGCTGGGCTTGATGGGTTTTTAGGTAATTGCCATGCTTCAGGTACGACAATACTTGAAGAGTTAGGCGAAGAACAT
ATGCGTTCTGGTAAGCCTATTTTTTATACCTCGGCGGATTCTGTTTTTCAAATCGCCTGCCATGAAGAAACCTTCGGTTT
AGACAATCTTTATCGTCTTTGCGAAATCACCCGTGAAGAGTTAGCGCCTTATAACATAGGTCGCGTGATTGCCCGTCCAT
TTAATGGTACTGGCCCAAGTGATTTTGCCCGTACTGGTAACCGTAAGGATTACTCCTTAGAGCCTCCAGCAAAAACCGTT
TTAGACAAGCTGAAAGCGGCTGGCGGTGAGGTGGTGAGTGTGGGTAAGATTGCCGACATTTATGCTTACTGTGGTATCAC
TAAAAAAGTGAAAGCGAATGGTCTTGAAGACCTCTTTGATGCCACCTTAGCCGAGGTGAAATCTGCTGGCGATAACACTA
TAGTGTTTACTAACTTTGTTGATTTCGACTCCCATTACGGTCATCGCCGTGATGTTGCGGGCTATGCTAAGGGGCTGGAA
TATTTCGATGCCCGTTTACCTGAAATGCTCGCATTATTGGGTGAAGATGATTTGCTGATTTTAACGGCTGATCATGGCTG
CGATCCAACATGGCAAGGCACTGACCATACCCGTGAGTATGTACCAGTACTGGCCTATGGCGCGGGTTTAAAAGCAGGAT
CGCTTGGCCGTCGTAACAGCTTTGCCGATATCGGCCAATCCATTGCTAGCCATTTTAAGCTTGAGCCAATGGCCTATGGC
GAGTCGTTTATCTAA

Upstream 100 bases:

>100_bases
AAATGCGGTGAAAAAAGCGATTCACATAGGTGAAACCGCCCCAGAAAAAACACCTGAGATCTACGCTTACATTCGTGCAG
CGGATCTTTAAGGAAAAATG

Downstream 100 bases:

>100_bases
TTACACATACAAGATATCGATTTGGCGGCTGACATTGAGTCGCCAGTAAACAAAGACTTAAGTCTTAATAAAATAAACAG
GGGTTATTTCGATGGCAACA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGKPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELAPYNIGRVIARPFNGTGPSDFARTGNRKDYSLEPPAKTV
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEDLFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAYGAGLKAGSLGRRNSFADIGQSIASHFKLEPMAYG
ESFI

Sequences:

>Translated_404_residues
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGKPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELAPYNIGRVIARPFNGTGPSDFARTGNRKDYSLEPPAKTV
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEDLFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAYGAGLKAGSLGRRNSFADIGQSIASHFKLEPMAYG
ESFI
>Mature_404_residues
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGKPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELAPYNIGRVIARPFNGTGPSDFARTGNRKDYSLEPPAKTV
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEDLFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAYGAGLKAGSLGRRNSFADIGQSIASHFKLEPMAYG
ESFI

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=406, Percent_Identity=70.4433497536946, Blast_Score=591, Evalue=1e-170,
Organism=Escherichia coli, GI1789781, Length=438, Percent_Identity=27.6255707762557, Blast_Score=118, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43484; Mature: 43484

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHAAMESTGAFAPGFGDNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
CCHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGKPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDNLYRLCEITREELAPYNIGRVIARPFNGTGPSDFARTGNRKDYSLEPPAKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHHCCCCCCCCCCCCHHHH
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEDLFDATLAEVKSAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSHYGHRRDVAGYAKGLEYFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHH
VPVLAYGAGLKAGSLGRRNSFADIGQSIASHFKLEPMAYGESFI
HHHEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCC
>Mature Secondary Structure
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHAAMESTGAFAPGFGDNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
CCHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGKPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDNLYRLCEITREELAPYNIGRVIARPFNGTGPSDFARTGNRKDYSLEPPAKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHHCCCCCCCCCCCCHHHH
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEDLFDATLAEVKSAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSHYGHRRDVAGYAKGLEYFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHH
VPVLAYGAGLKAGSLGRRNSFADIGQSIASHFKLEPMAYGESFI
HHHEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA