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The map label for this gene is yjjV [H]

Identifier: 120598009

GI number: 120598009

Start: 1335961

End: 1336725

Strand: Direct

Name: yjjV [H]

Synonym: Sputw3181_1186

Alternate gene names: 120598009

Gene position: 1335961-1336725 (Clockwise)

Preceding gene: 120598008

Following gene: 120598010

Centisome position: 28.37

GC content: 40.13

Gene sequence:

>765_bases
GTGCTAGATACCCATGCTCATTTGGACTTTGCTGAATTTGATGCGGATCGCAGTGATGTTGTGCTAAAAATGCATCAAGC
TGGGATAAAAAACCTGATTATTCCTGGCGTTTCCCCTTCTCATTGGCAAAAACAACTTACCGTTGCAGAGCAATATCAAG
CCTACTTTGCACTGGGTATTCACCCTTGGTTCTGTCCGCAGGATATCGATGCATCACTTCAAGCATTAGCATCTGAGGTA
TCAAGATGGATTGGGTGTTCTCGATTTGTTGCTATTGGTGAGTGTGGTTTAGATAAACTTTATTCTGCGACTTGGCCGCA
ACAACTGGCTTTTTTTGAAGCTCAATTACGGTTAGCAAAAGCCGTTAATCTGCCTGTTATTGTCCATAGTGTTAAAGCCC
ATTCAGAGACTTTAGATTGCTTAAAAAGATATCAATTACCTCGAGGTGGCGTAATACACGCTTTTTCTGGTAGTCCTGAA
ATCGCCCTCGAGTATATTAAATTAGGTTACAAGTTAGGAATTGGTGGTTTAATTATGAACCCCAATGCTAAAAAATTACT
CAAAACGGTATGTGAACTCCCTCTCGAAAATTTCCTGCTTGAGACCGATTCGCCATCAATGGCGCCAATAAATGTTACTG
AAAAACGTAATCAACCGGCGAATGCCGCTCTTTTTATAGACAAAATTGCCAATTTGCAAAAAAAATCAAGTGTTCTAATA
TCAGAACACTTGATGTTGAATGCTATGCAACTGTTTGACCTTTAG

Upstream 100 bases:

>100_bases
CTTGAGGATCCTCCTTTGGTTTCAAAGCGTTCTTCCTGTTTGACGGAAGATAAGCAGGTTTCATCGCCTACTGATAAAAC
GTCTGAATGAGGCATTTTCT

Downstream 100 bases:

>100_bases
TTGTTTTTAATTAAACAGGTGTATGTCGCATTAGCATTCTTCACTAAGCGATTGAAATTAAACTCCAAAAATTTGATCAA
AACGACGATTTTCGACTTTT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MLDTHAHLDFAEFDADRSDVVLKMHQAGIKNLIIPGVSPSHWQKQLTVAEQYQAYFALGIHPWFCPQDIDASLQALASEV
SRWIGCSRFVAIGECGLDKLYSATWPQQLAFFEAQLRLAKAVNLPVIVHSVKAHSETLDCLKRYQLPRGGVIHAFSGSPE
IALEYIKLGYKLGIGGLIMNPNAKKLLKTVCELPLENFLLETDSPSMAPINVTEKRNQPANAALFIDKIANLQKKSSVLI
SEHLMLNAMQLFDL

Sequences:

>Translated_254_residues
MLDTHAHLDFAEFDADRSDVVLKMHQAGIKNLIIPGVSPSHWQKQLTVAEQYQAYFALGIHPWFCPQDIDASLQALASEV
SRWIGCSRFVAIGECGLDKLYSATWPQQLAFFEAQLRLAKAVNLPVIVHSVKAHSETLDCLKRYQLPRGGVIHAFSGSPE
IALEYIKLGYKLGIGGLIMNPNAKKLLKTVCELPLENFLLETDSPSMAPINVTEKRNQPANAALFIDKIANLQKKSSVLI
SEHLMLNAMQLFDL
>Mature_254_residues
MLDTHAHLDFAEFDADRSDVVLKMHQAGIKNLIIPGVSPSHWQKQLTVAEQYQAYFALGIHPWFCPQDIDASLQALASEV
SRWIGCSRFVAIGECGLDKLYSATWPQQLAFFEAQLRLAKAVNLPVIVHSVKAHSETLDCLKRYQLPRGGVIHAFSGSPE
IALEYIKLGYKLGIGGLIMNPNAKKLLKTVCELPLENFLLETDSPSMAPINVTEKRNQPANAALFIDKIANLQKKSSVLI
SEHLMLNAMQLFDL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=31.5985130111524, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=31.5985130111524, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=31.2727272727273, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=30.46875, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI14042943, Length=198, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061595, Length=232, Percent_Identity=31.8965517241379, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI225903439, Length=181, Percent_Identity=32.0441988950276, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI225903424, Length=278, Percent_Identity=26.2589928057554, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=37.3540856031128, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI48994985, Length=264, Percent_Identity=31.0606060606061, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787342, Length=228, Percent_Identity=32.0175438596491, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=29.4776119402985, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=218, Percent_Identity=29.3577981651376, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648690, Length=290, Percent_Identity=25.8620689655172, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI221330018, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24586117, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28236; Mature: 28236

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDTHAHLDFAEFDADRSDVVLKMHQAGIKNLIIPGVSPSHWQKQLTVAEQYQAYFALGI
CCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHEECC
HPWFCPQDIDASLQALASEVSRWIGCSRFVAIGECGLDKLYSATWPQQLAFFEAQLRLAK
CCCCCCCCCCHHHHHHHHHHHHHHCHHHHHEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
AVNLPVIVHSVKAHSETLDCLKRYQLPRGGVIHAFSGSPEIALEYIKLGYKLGIGGLIMN
HCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEC
PNAKKLLKTVCELPLENFLLETDSPSMAPINVTEKRNQPANAALFIDKIANLQKKSSVLI
CCHHHHHHHHHHCCHHHHEEECCCCCCCCEECHHCCCCCCCHHHHHHHHHHHHHHHHHHH
SEHLMLNAMQLFDL
HHHHHHHHHHHHCC
>Mature Secondary Structure
MLDTHAHLDFAEFDADRSDVVLKMHQAGIKNLIIPGVSPSHWQKQLTVAEQYQAYFALGI
CCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHEECC
HPWFCPQDIDASLQALASEVSRWIGCSRFVAIGECGLDKLYSATWPQQLAFFEAQLRLAK
CCCCCCCCCCHHHHHHHHHHHHHHCHHHHHEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
AVNLPVIVHSVKAHSETLDCLKRYQLPRGGVIHAFSGSPEIALEYIKLGYKLGIGGLIMN
HCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEC
PNAKKLLKTVCELPLENFLLETDSPSMAPINVTEKRNQPANAALFIDKIANLQKKSSVLI
CCHHHHHHHHHHCCHHHHEEECCCCCCCCEECHHCCCCCCCHHHHHHHHHHHHHHHHHHH
SEHLMLNAMQLFDL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]