| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597986
Identifier: 120597986
GI number: 120597986
Start: 1312873
End: 1313580
Strand: Direct
Name: 120597986
Synonym: Sputw3181_1163
Alternate gene names: NA
Gene position: 1312873-1313580 (Clockwise)
Preceding gene: 120597985
Following gene: 120597987
Centisome position: 27.88
GC content: 45.76
Gene sequence:
>708_bases ATGATGGTATTAACCCTGTTAACAAAGCAGATTGATGGTGAGTTTACGGTTTACTGGAAGACCGGCCTTCGAAGAGGTGG TGAGCTAAAGGTCGATTTAGGTGAGCAATACGACAAGCTACCTGAGCAGCAAAAGCCAATTGCAGCTGAGGTTTATGCTA TTCATCACCTACTGTCAGTGAAAGAGGTGATGGGGAGTAACCGAAGCGGTAATGGGCTTCAAATCCGGGTCAGTAAAGGA GCCATCAAAAAGTTACAGAAACAACGCTCAACTCAGCATTCACTTTACAGCCTGACTAGGTTCTTGCTCACCCGCTACCA AGAAGCACAGATATCGGTAGAAAAACGGGAAGAATGGCTCTCCCATTCCTTCGAAGAATACTGCGTCGATAATGCTACCG TGAGAGAAATCGATGAGGTCATCAATGTGCCAAGTATTGGGCCTGTCGTGGTGACTCGTCATGCACAGGAACGGTTTGTG GAACGGCTTTCAGACGGTGTACCTAAGCATCCTTGGAAGGCTTTGTGCTCAAAGCTGCTATGTTCTGCGCTAACTAAAGC CCAGTTACCAGAAAGCGTCACTATCCAAAAAGCAAAAAAATATGCACAAGAGGCCGAGTTCTGGCAATACATGGGGAGCA AGATGTACTTTGTTATGGTTCCAAGTGGCTCAATTAAAACTTTGGTTACGGTTTTTGCAGTTAAGTGA
Upstream 100 bases:
>100_bases TTCATATCTGATCCAAGGGGCTTCGGCCCCTTTTTTTGCGCCTTGCATATTTGAAAAAACATGGAGAATGAAAAATAGAT AACCAATAGGAGAAACAAAT
Downstream 100 bases:
>100_bases GCTAATGTAGTATTCGCACTTTATGAATATTACTTATGTGCCAAAAGCGGACATCACTATTTTAATCAATCACAACTCAA GTTTTTTTACATATTGCTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MMVLTLLTKQIDGEFTVYWKTGLRRGGELKVDLGEQYDKLPEQQKPIAAEVYAIHHLLSVKEVMGSNRSGNGLQIRVSKG AIKKLQKQRSTQHSLYSLTRFLLTRYQEAQISVEKREEWLSHSFEEYCVDNATVREIDEVINVPSIGPVVVTRHAQERFV ERLSDGVPKHPWKALCSKLLCSALTKAQLPESVTIQKAKKYAQEAEFWQYMGSKMYFVMVPSGSIKTLVTVFAVK
Sequences:
>Translated_235_residues MMVLTLLTKQIDGEFTVYWKTGLRRGGELKVDLGEQYDKLPEQQKPIAAEVYAIHHLLSVKEVMGSNRSGNGLQIRVSKG AIKKLQKQRSTQHSLYSLTRFLLTRYQEAQISVEKREEWLSHSFEEYCVDNATVREIDEVINVPSIGPVVVTRHAQERFV ERLSDGVPKHPWKALCSKLLCSALTKAQLPESVTIQKAKKYAQEAEFWQYMGSKMYFVMVPSGSIKTLVTVFAVK >Mature_235_residues MMVLTLLTKQIDGEFTVYWKTGLRRGGELKVDLGEQYDKLPEQQKPIAAEVYAIHHLLSVKEVMGSNRSGNGLQIRVSKG AIKKLQKQRSTQHSLYSLTRFLLTRYQEAQISVEKREEWLSHSFEEYCVDNATVREIDEVINVPSIGPVVVTRHAQERFV ERLSDGVPKHPWKALCSKLLCSALTKAQLPESVTIQKAKKYAQEAEFWQYMGSKMYFVMVPSGSIKTLVTVFAVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26792; Mature: 26792
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMVLTLLTKQIDGEFTVYWKTGLRRGGELKVDLGEQYDKLPEQQKPIAAEVYAIHHLLSV CCHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHH KEVMGSNRSGNGLQIRVSKGAIKKLQKQRSTQHSLYSLTRFLLTRYQEAQISVEKREEWL HHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SHSFEEYCVDNATVREIDEVINVPSIGPVVVTRHAQERFVERLSDGVPKHPWKALCSKLL HHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEEHHHHHHHHHHHHCCCCCCCHHHHHHHHH CSALTKAQLPESVTIQKAKKYAQEAEFWQYMGSKMYFVMVPSGSIKTLVTVFAVK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC >Mature Secondary Structure MMVLTLLTKQIDGEFTVYWKTGLRRGGELKVDLGEQYDKLPEQQKPIAAEVYAIHHLLSV CCHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHH KEVMGSNRSGNGLQIRVSKGAIKKLQKQRSTQHSLYSLTRFLLTRYQEAQISVEKREEWL HHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SHSFEEYCVDNATVREIDEVINVPSIGPVVVTRHAQERFVERLSDGVPKHPWKALCSKLL HHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEEHHHHHHHHHHHHCCCCCCCHHHHHHHHH CSALTKAQLPESVTIQKAKKYAQEAEFWQYMGSKMYFVMVPSGSIKTLVTVFAVK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA