| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597985
Identifier: 120597985
GI number: 120597985
Start: 1311710
End: 1312783
Strand: Direct
Name: 120597985
Synonym: Sputw3181_1162
Alternate gene names: NA
Gene position: 1311710-1312783 (Clockwise)
Preceding gene: 120597984
Following gene: 120597986
Centisome position: 27.86
GC content: 47.58
Gene sequence:
>1074_bases ATGGCGTTACCTTTACAAATTGAAACAGTAAGGCCATATCTTAATGGCCAATGGCTTCAAATACTGGCGGCGTTGGCGCC AGAACTTGATGCCGCTATTGCTCGAAAAGGCCGTCATGTGGCTTGTCCTGTTCATGGCGGTCGTGATGGCTTTAGGCTGT TCAAAGATGCTGAATATACCGGAGGTGGCGTTTGTAACACCTGCGGTATCTTTCATGATGGCTTTGAACTGTTGTCTTGG ATTAATGGATGGAACTTTGCTCAGTCTATTGAAGCAATCGGCCAAGTTCTAGGTATTCAACCCGGACAAATACAAGCGCC TACTCGGCCAATACCGAGTAACGCTGTTGATTGGAAGGCTAAAAAGCAGGAAGAGGACAAAGCGATTATCCATCGCTTGA ATCAAACCTGGGGAGAAACGTTATCTCTTGCAGATACTCGTGCGCAACCAGTTTGGAACTACTTGCGTCGTCGTGGCATT GTTACCCGGCTTCGTCCTGAATGGGATTCGGTGCTGAGGTTTCATCCAAGCTTGCCTTACCATGATGAAGATGGTCTGTT GATCGATAGCTACCCAGCGCTGCTAGGTAAAATCGTTACGCAGCAAGGGCGTTCGGCCACGTTCCATCGGATCTACCTAA GTGAAGATGGATTCAAAGCGCCGGTTGAAAAGCCTAAAAAGATGATGCCGATACCAAGTGACAGAACAATCACTGGCGGT GCCATTCCGATTGGTGAGCCTGGTGAGGTACTAGGTGTTTCTGAAGGTATCGAAACGGCTTTAGCTGTTACCAGAGCAAC GGGACAAACATGTTGGTCGGTTGTGAATGCAACGCTACTTGCTAGGTTTGAACCACCAAGTAATGTGAAAATGCTGTACA TCTGGGCAGATCATGATCTATCTGAGACCGGCCTGAATGCAGCGAATGAACTCAAGAAAAAAGCCTGGCAAAAAGGCATT CTGACACAAATGTTGATCCCTCCGATACCAACGTCACTCGGCGTGAAAAGTTGGGATTGGAATGATGTGCTGAATGTTTA CGGTGCCATGGGCTTTCCGAAAGTTCATATCTGA
Upstream 100 bases:
>100_bases CTTGACTAACGTTCCTGCATTAACCAAACGGCTCAATGCAGGACCCAAGCTGACTTTTACCACCTGTGGTAGGAGTCGGC ATTTTACTTAAGGAGGTTAT
Downstream 100 bases:
>100_bases TCCAAGGGGCTTCGGCCCCTTTTTTTGCGCCTTGCATATTTGAAAAAACATGGAGAATGAAAAATAGATAACCAATAGGA GAAACAAATATGATGGTATT
Product: phage P4 alpha zinc-binding domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MALPLQIETVRPYLNGQWLQILAALAPELDAAIARKGRHVACPVHGGRDGFRLFKDAEYTGGGVCNTCGIFHDGFELLSW INGWNFAQSIEAIGQVLGIQPGQIQAPTRPIPSNAVDWKAKKQEEDKAIIHRLNQTWGETLSLADTRAQPVWNYLRRRGI VTRLRPEWDSVLRFHPSLPYHDEDGLLIDSYPALLGKIVTQQGRSATFHRIYLSEDGFKAPVEKPKKMMPIPSDRTITGG AIPIGEPGEVLGVSEGIETALAVTRATGQTCWSVVNATLLARFEPPSNVKMLYIWADHDLSETGLNAANELKKKAWQKGI LTQMLIPPIPTSLGVKSWDWNDVLNVYGAMGFPKVHI
Sequences:
>Translated_357_residues MALPLQIETVRPYLNGQWLQILAALAPELDAAIARKGRHVACPVHGGRDGFRLFKDAEYTGGGVCNTCGIFHDGFELLSW INGWNFAQSIEAIGQVLGIQPGQIQAPTRPIPSNAVDWKAKKQEEDKAIIHRLNQTWGETLSLADTRAQPVWNYLRRRGI VTRLRPEWDSVLRFHPSLPYHDEDGLLIDSYPALLGKIVTQQGRSATFHRIYLSEDGFKAPVEKPKKMMPIPSDRTITGG AIPIGEPGEVLGVSEGIETALAVTRATGQTCWSVVNATLLARFEPPSNVKMLYIWADHDLSETGLNAANELKKKAWQKGI LTQMLIPPIPTSLGVKSWDWNDVLNVYGAMGFPKVHI >Mature_356_residues ALPLQIETVRPYLNGQWLQILAALAPELDAAIARKGRHVACPVHGGRDGFRLFKDAEYTGGGVCNTCGIFHDGFELLSWI NGWNFAQSIEAIGQVLGIQPGQIQAPTRPIPSNAVDWKAKKQEEDKAIIHRLNQTWGETLSLADTRAQPVWNYLRRRGIV TRLRPEWDSVLRFHPSLPYHDEDGLLIDSYPALLGKIVTQQGRSATFHRIYLSEDGFKAPVEKPKKMMPIPSDRTITGGA IPIGEPGEVLGVSEGIETALAVTRATGQTCWSVVNATLLARFEPPSNVKMLYIWADHDLSETGLNAANELKKKAWQKGIL TQMLIPPIPTSLGVKSWDWNDVLNVYGAMGFPKVHI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39539; Mature: 39408
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPLQIETVRPYLNGQWLQILAALAPELDAAIARKGRHVACPVHGGRDGFRLFKDAEYT CCCCEEEHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCC GGGVCNTCGIFHDGFELLSWINGWNFAQSIEAIGQVLGIQPGQIQAPTRPIPSNAVDWKA CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH KKQEEDKAIIHRLNQTWGETLSLADTRAQPVWNYLRRRGIVTRLRPEWDSVLRFHPSLPY HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCHHHHHEECCCCCC HDEDGLLIDSYPALLGKIVTQQGRSATFHRIYLSEDGFKAPVEKPKKMMPIPSDRTITGG CCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCEECCC AIPIGEPGEVLGVSEGIETALAVTRATGQTCWSVVNATLLARFEPPSNVKMLYIWADHDL CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCC SETGLNAANELKKKAWQKGILTQMLIPPIPTSLGVKSWDWNDVLNVYGAMGFPKVHI CHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECC >Mature Secondary Structure ALPLQIETVRPYLNGQWLQILAALAPELDAAIARKGRHVACPVHGGRDGFRLFKDAEYT CCCEEEHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCC GGGVCNTCGIFHDGFELLSWINGWNFAQSIEAIGQVLGIQPGQIQAPTRPIPSNAVDWKA CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH KKQEEDKAIIHRLNQTWGETLSLADTRAQPVWNYLRRRGIVTRLRPEWDSVLRFHPSLPY HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCHHHHHEECCCCCC HDEDGLLIDSYPALLGKIVTQQGRSATFHRIYLSEDGFKAPVEKPKKMMPIPSDRTITGG CCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCEECCC AIPIGEPGEVLGVSEGIETALAVTRATGQTCWSVVNATLLARFEPPSNVKMLYIWADHDL CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCC SETGLNAANELKKKAWQKGILTQMLIPPIPTSLGVKSWDWNDVLNVYGAMGFPKVHI CHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA