| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597925
Identifier: 120597925
GI number: 120597925
Start: 1244944
End: 1246098
Strand: Direct
Name: 120597925
Synonym: Sputw3181_1095
Alternate gene names: NA
Gene position: 1244944-1246098 (Clockwise)
Preceding gene: 120597924
Following gene: 120597926
Centisome position: 26.44
GC content: 43.72
Gene sequence:
>1155_bases ATGGTCGCTAAAGTCACAAGACCCATAGACCGTAAAGTTGAGCGAGAACTTTGGGCTCGTGCCGCTGCTCGTTGTCAGTT TAGCGGGTGTAATAAATTGCTATACAAATCAGCGGTGACTCAGGAATCGGTCAATGTCTCTCAAAATGCTCATATTTACG CATTTTCTGAGAATGGGCCTCGTGGTTGGGGACTCTTTAAAACTAAGCCAACCAGTTTGAATGACGTCAGCAACCTCATG TTGCTGTGCTATGACTGTCACAAAAAAATTGACCAGAAAGGCAGCGAAGATAGGTATCCAGCCGACCTCTTGATTAGTTG GAAAATGCAGCATGAGCAACGTATAGAAATCCTCACAGGCATTGCTCCTGATCGCAAATCAAATGTTGTTTTATATGGTG CCAATATTGGAACTGAAAGATCACCGATTAATTATCACGGTTGTGTTGAGGCAATGTTTCCGAATTGGTATCCGGCAACT GAAAAGCCAGTGACCCTATCCATGGTATCAGAGCTGAAGGATCACTCTGAACAATATTGGCAAGCAGAGTCGCAACACCT AACGAAGCGTTTTCAAAGTAAAATTTCATCGATCATCGAAGAAGATTCTTGTAAGCATTTTTCATTGTTCGCGTTAGCTC CTCAACCATTGTTAATAAAACTTGGCGCTTTGCTTACCGACAAAATTGAGGTTGAGACTTATCAGCTGCATCGAGAGCCT AAAGGCTGGTTTTGGCAAGACTGTTCAGATGATTTTGAGTACATCATCAACAGACCTCAAAATATGGAGGGAAAGCCAGC CCTGCTACTTTCTTTGAGTGACCATGTGTCGCATGAGCGAATTACTGGGGTTCTAGGGCCAGATACATCGATTTGGGAAG TGACTATCAAGCAGCCTCATAATGATTTCATGCAGTCAAAGCAGCAGCTCTCCTTGTTCAGAAAGTGCATAAGAAAGCTG ATTGTTGAAATCAAAAATACACACGGGGCTGCCACGCCACTGCAAATTTTTCCTGTGATGCCAGTATCGTGTGCCGTCGA ATTAGGACGGGCCAGAATGCCTAAGGCTGATATGCCATGGCTTATTTATGACCACGACATAAAAACACAACAATTCGTAA TGGCAGTCGAGCTTCGAGGAGATCTACATGAGTAA
Upstream 100 bases:
>100_bases GCTTGGGCTAATCGCTGGATGTGCTTATGTCAGCCATTTGCTCTGTGATGCGACAACACCGCGCTCACTTCCTTTAATTG GCAAACTATAGGAGTTTTGA
Downstream 100 bases:
>100_bases TACTAAAAGTAACGACGTTCTAAACACAATTCTGGAAAAAATTGAGCTACCAGACAGTGCTTATGAAAAGGCTGAAAAAC GCTATAAGGATCTAGGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MVAKVTRPIDRKVERELWARAAARCQFSGCNKLLYKSAVTQESVNVSQNAHIYAFSENGPRGWGLFKTKPTSLNDVSNLM LLCYDCHKKIDQKGSEDRYPADLLISWKMQHEQRIEILTGIAPDRKSNVVLYGANIGTERSPINYHGCVEAMFPNWYPAT EKPVTLSMVSELKDHSEQYWQAESQHLTKRFQSKISSIIEEDSCKHFSLFALAPQPLLIKLGALLTDKIEVETYQLHREP KGWFWQDCSDDFEYIINRPQNMEGKPALLLSLSDHVSHERITGVLGPDTSIWEVTIKQPHNDFMQSKQQLSLFRKCIRKL IVEIKNTHGAATPLQIFPVMPVSCAVELGRARMPKADMPWLIYDHDIKTQQFVMAVELRGDLHE
Sequences:
>Translated_384_residues MVAKVTRPIDRKVERELWARAAARCQFSGCNKLLYKSAVTQESVNVSQNAHIYAFSENGPRGWGLFKTKPTSLNDVSNLM LLCYDCHKKIDQKGSEDRYPADLLISWKMQHEQRIEILTGIAPDRKSNVVLYGANIGTERSPINYHGCVEAMFPNWYPAT EKPVTLSMVSELKDHSEQYWQAESQHLTKRFQSKISSIIEEDSCKHFSLFALAPQPLLIKLGALLTDKIEVETYQLHREP KGWFWQDCSDDFEYIINRPQNMEGKPALLLSLSDHVSHERITGVLGPDTSIWEVTIKQPHNDFMQSKQQLSLFRKCIRKL IVEIKNTHGAATPLQIFPVMPVSCAVELGRARMPKADMPWLIYDHDIKTQQFVMAVELRGDLHE >Mature_384_residues MVAKVTRPIDRKVERELWARAAARCQFSGCNKLLYKSAVTQESVNVSQNAHIYAFSENGPRGWGLFKTKPTSLNDVSNLM LLCYDCHKKIDQKGSEDRYPADLLISWKMQHEQRIEILTGIAPDRKSNVVLYGANIGTERSPINYHGCVEAMFPNWYPAT EKPVTLSMVSELKDHSEQYWQAESQHLTKRFQSKISSIIEEDSCKHFSLFALAPQPLLIKLGALLTDKIEVETYQLHREP KGWFWQDCSDDFEYIINRPQNMEGKPALLLSLSDHVSHERITGVLGPDTSIWEVTIKQPHNDFMQSKQQLSLFRKCIRKL IVEIKNTHGAATPLQIFPVMPVSCAVELGRARMPKADMPWLIYDHDIKTQQFVMAVELRGDLHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44025; Mature: 44025
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAKVTRPIDRKVERELWARAAARCQFSGCNKLLYKSAVTQESVNVSQNAHIYAFSENGP CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC RGWGLFKTKPTSLNDVSNLMLLCYDCHKKIDQKGSEDRYPADLLISWKMQHEQRIEILTG CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHC IAPDRKSNVVLYGANIGTERSPINYHGCVEAMFPNWYPATEKPVTLSMVSELKDHSEQYW CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH QAESQHLTKRFQSKISSIIEEDSCKHFSLFALAPQPLLIKLGALLTDKIEVETYQLHREP HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEEEEEECCC KGWFWQDCSDDFEYIINRPQNMEGKPALLLSLSDHVSHERITGVLGPDTSIWEVTIKQPH CCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEHHHCCHHHEEEEECCCCCEEEEEECCCC NDFMQSKQQLSLFRKCIRKLIVEIKNTHGAATPLQIFPVMPVSCAVELGRARMPKADMPW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCE LIYDHDIKTQQFVMAVELRGDLHE EEEECCCCCCCEEEEEEECCCCCC >Mature Secondary Structure MVAKVTRPIDRKVERELWARAAARCQFSGCNKLLYKSAVTQESVNVSQNAHIYAFSENGP CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC RGWGLFKTKPTSLNDVSNLMLLCYDCHKKIDQKGSEDRYPADLLISWKMQHEQRIEILTG CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHC IAPDRKSNVVLYGANIGTERSPINYHGCVEAMFPNWYPATEKPVTLSMVSELKDHSEQYW CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH QAESQHLTKRFQSKISSIIEEDSCKHFSLFALAPQPLLIKLGALLTDKIEVETYQLHREP HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEEEEEECCC KGWFWQDCSDDFEYIINRPQNMEGKPALLLSLSDHVSHERITGVLGPDTSIWEVTIKQPH CCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEHHHCCHHHEEEEECCCCCEEEEEECCCC NDFMQSKQQLSLFRKCIRKLIVEIKNTHGAATPLQIFPVMPVSCAVELGRARMPKADMPW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCE LIYDHDIKTQQFVMAVELRGDLHE EEEECCCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA