Click here to switch to the map view.

The map label for this gene is secF

Identifier: 120597890

GI number: 120597890

Start: 1205155

End: 1206051

Strand: Direct

Name: secF

Synonym: Sputw3181_1060

Alternate gene names: 120597890

Gene position: 1205155-1206051 (Clockwise)

Preceding gene: 120597889

Following gene: 120597892

Centisome position: 25.6

GC content: 45.26

Gene sequence:

>897_bases
ATGAAAAATATCAATCTAACGGGTCAATTAACTCTGTGGCGCTATATTTCGAGCGCGATTTCGATCTTTTTAATGCTGGC
ATCGTTAACCATTATCGGCGTGAAGGGCTTTAACTGGGGCTTAGATTTTACCGGTGGTGTGGTCACCGAAGTGCAGATCG
ATAGAAAAATTACCAGCAGTGAGTTGCAACCTTTACTCAACGCTGCTTATCAACAAGAGGTCAGTGTGGTTTCGGCCAGT
GAGCCGGGGCGTTGGGTGTTACGTTATGCTGACACTGCACAAAGCAATGTGGATATTGCGCAAACCTTAGCGCCACTGGG
CGAGATACAAGTGCTAAATACCAGTATTGTTGGCCCGCAGGTAGGTAAAGAATTGGCAGAGCAGGGTGGTTTAGCACTGC
TAGTCGCTATGCTGTGTATTTTGGGGTACTTAAGTTATCGCTTCGAATGGCGGCTTGCTTCTGGTGCACTATTCGCGTTA
GTGCATGATGTGATTTTTGTGCTTGCTTTCTTTGCGCTGACGCAGATGGAGTTTAATTTAACTGTGCTCGCTGCTGTGCT
GGCGATTTTAGGCTATTCCTTAAATGACTCGATTATCATTGCTGATCGTATTCGTGAGTTATTAATTGCTAAGCCAAAAC
TTGCGATTCAAGAGATTAATAATCAAGCGATTGTGGCGACGTTTTCCCGCACTATGGTGACATCAGGGACCACCTTAATG
ACGGTTGGTGCACTGTGGATCATGGGTGGTGGGCCGCTGGAGGGGTTTTCGATTGCCATGTTTATCGGTATTTTAACGGG
AACATTCTCATCTATTTCTGTTGGTACTTCATTACCTGAACTGTTAGGTTTATCGCCAGAGCATTATAAGGTGCAAGTCA
TTTCAGATACGCCTTAA

Upstream 100 bases:

>100_bases
TAGGTCTATTGACCAGCATGTTTACCGGTATCTTTGCTTCAAGGGCCTTGATCAACTTAGTTTATGGACGTGATGCTAGC
CGTCATGTGAGGGTATAACC

Downstream 100 bases:

>100_bases
TCGTTCAACGTAAAGTGAAAACAAAGAGGCCACTCAATTGAGTGGCCTCTTTGTTAACACAATAAAAATTAAGAAAAATT
ACTTTGCCTTTGGCAGAGCA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKNINLTGQLTLWRYISSAISIFLMLASLTIIGVKGFNWGLDFTGGVVTEVQIDRKITSSELQPLLNAAYQQEVSVVSAS
EPGRWVLRYADTAQSNVDIAQTLAPLGEIQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFAL
VHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLM
TVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVISDTP

Sequences:

>Translated_298_residues
MKNINLTGQLTLWRYISSAISIFLMLASLTIIGVKGFNWGLDFTGGVVTEVQIDRKITSSELQPLLNAAYQQEVSVVSAS
EPGRWVLRYADTAQSNVDIAQTLAPLGEIQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFAL
VHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLM
TVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVISDTP
>Mature_298_residues
MKNINLTGQLTLWRYISSAISIFLMLASLTIIGVKGFNWGLDFTGGVVTEVQIDRKITSSELQPLLNAAYQQEVSVVSAS
EPGRWVLRYADTAQSNVDIAQTLAPLGEIQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFAL
VHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLM
TVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVISDTP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=298, Percent_Identity=39.261744966443, Blast_Score=203, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32131; Mature: 32131

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNINLTGQLTLWRYISSAISIFLMLASLTIIGVKGFNWGLDFTGGVVTEVQIDRKITSS
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEEECCCCCHH
ELQPLLNAAYQQEVSVVSASEPGRWVLRYADTAQSNVDIAQTLAPLGEIQVLNTSIVGPQ
HHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCHH
VGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFALTQMEFNL
HHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHH
TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLM
HHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHCCCCEEEEEEHHHHHCCCCHHH
TVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVISDTP
HHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKNINLTGQLTLWRYISSAISIFLMLASLTIIGVKGFNWGLDFTGGVVTEVQIDRKITSS
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEEECCCCCHH
ELQPLLNAAYQQEVSVVSASEPGRWVLRYADTAQSNVDIAQTLAPLGEIQVLNTSIVGPQ
HHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCHH
VGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFALTQMEFNL
HHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHH
TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLM
HHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHCCCCEEEEEEHHHHHCCCCHHH
TVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVISDTP
HHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]