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The map label for this gene is secD

Identifier: 120597889

GI number: 120597889

Start: 1203338

End: 1205152

Strand: Direct

Name: secD

Synonym: Sputw3181_1059

Alternate gene names: 120597889

Gene position: 1203338-1205152 (Clockwise)

Preceding gene: 120597888

Following gene: 120597890

Centisome position: 25.56

GC content: 47.71

Gene sequence:

>1815_bases
ATGGAAAGAAAACCCAATCAACGGCTGTTAAATCACTATTCAGCCTGGAAATACGTAGTCTTGGTTGTTACTCTCATTGT
GATGTTATTCAGTGCCTTGCCAACATTTTATGGTGAGGATGCCGCAGTGCAAGTGGGCGCGAAGGCGGGGTTAACACTCG
CGCCTGTTGCCCTTCGAGATAAGCTGCAAGCTGAAGGCGTGACGGTAAAACGTATCGACCAAAAGAATGGTGAAACCTTA
ATTGTCCTCGATGAGGATAGCCAACAAACCTTAGTCAAAACTTTGGTTTCTTCTATGGTGACAGAGCCAAAAGAGTTGAC
TTTATCCCTTGCCAGTGCGGCGCCAAGTTGGTTACAAAACTTAGGCTTTCAGCCGATTAAGCTGGGGCTCGATTTACGCG
GTGGCGTACAGTTCTTACTCGATGTGGATGTTGAACCTGTGTATCAAACTCAGGCAGAAGCACTTGTCGATTCACTACGC
CAATTTATCCGTGAGCAGAACATTCGTGGCGCTAGCGTGCATTTGGATCAAAGCAGCCAGTTGAATGTAACCTTGCCTGA
TAATGATGCTCGCGCGGCCGTGCGTCAGATGATGAAACAGTCCTATCCCAATTGGCAGTCATCTAATGCAGATGATGCTG
GTTTACAGATTAAGTTGAGCCAAGAAGAACAAACGAAATTGCGTAATTTAACCGTGCAGCAAAACCTGCAGGTTATGCGT
AGTCGTATTGAAGAACTTGGCATCACTGAAGCCTTAGTGCAGCGCCAAGGCGAGCACCGAATTCGGATTGAATTGCCTGG
AGTACAAGATCCTGCCGCCGCTAAAAACGTGATTGGTGCTACAGCGAGCTTGGCTTTCTTCGAGGTGAAAGAGTCTGGCT
CTGTGAATGCTATGGTACTTAAAGATAAGTCAGGTAATTCGGTTTATGTTGGTCGCACACCAGTGCTGGGTGGCGATCAT
ATTGTCGATGCGAGGGCAAGCATAGGCGAGATGGGTATGGCCGAGGTGAACATAAATCTTGACCGTGTCGGCGGGCAGAA
AATGTCCGAGTTTTCCCGTACCAATATTGGTAAGCCTATGGCGACGTCTTACAGTGAATACAGCCGTGATGAGCAAGGTA
AAGCCAAGCAAACTCAAGAAATTATCAGCGTCGCGACCATTCAATCTCAGCTTGGGGATCGTTTTCGCATCACTGGTGCG
GGCACCTACCAAGAAGCACAACAATTAGCTCTGTTACTGCGAGCGGGTTCTATGACGGCGCCTGTGACTATCGTTGAGGA
GCGCACCATTGGTCCGACATTAGGTGCTGAAAACATTGAAAACGGTTTTGCCGCGCTCGGTTTGGGTATGGGTATTACCT
TGTTGTTTATGGCGCTTTGGTATCGCCGTCTCGGTTGGGTGGCAAATATTGCACTGATTAGCAATATGGTGATCCTGTTT
GGTTTACTGGCGCTTATCCCTGGCGCTGTATTGACCTTACCCGGTATTGCCGGCCTAGTGTTAACTGTGGGTATGGCGGT
TGATACTAACGTGCTGATTTTCGAGCGGATAAAAGATAAGTTAAAAGAAGGTCGCAGTTTCGCGCTGGCGATTGATACTG
GGTTTGATAGCGCATTTTCTACCATTTTCGACGCTAACTTCACCACGATGATCACCGCTGTTGTGCTTTATTCCATTGGT
AACGGTCCGATCCAAGGTTTTGCCTTGACCTTAGGTCTAGGTCTATTGACCAGCATGTTTACCGGTATCTTTGCTTCAAG
GGCCTTGATCAACTTAGTTTATGGACGTGATGCTAGCCGTCATGTGAGGGTATAA

Upstream 100 bases:

>100_bases
GCTTAGCTGCTGGTACTTAATAACATGTTTCGGACTGATATCAATATGTTCGTTTAGCGATTTGACTCAAATGCTGAGCG
ATAAATAGCGAGTTAATCCC

Downstream 100 bases:

>100_bases
CCATGAAAAATATCAATCTAACGGGTCAATTAACTCTGTGGCGCTATATTTCGAGCGCGATTTCGATCTTTTTAATGCTG
GCATCGTTAACCATTATCGG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MERKPNQRLLNHYSAWKYVVLVVTLIVMLFSALPTFYGEDAAVQVGAKAGLTLAPVALRDKLQAEGVTVKRIDQKNGETL
IVLDEDSQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAEALVDSLR
QFIREQNIRGASVHLDQSSQLNVTLPDNDARAAVRQMMKQSYPNWQSSNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLKDKSGNSVYVGRTPVLGGDH
IVDARASIGEMGMAEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV

Sequences:

>Translated_604_residues
MERKPNQRLLNHYSAWKYVVLVVTLIVMLFSALPTFYGEDAAVQVGAKAGLTLAPVALRDKLQAEGVTVKRIDQKNGETL
IVLDEDSQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAEALVDSLR
QFIREQNIRGASVHLDQSSQLNVTLPDNDARAAVRQMMKQSYPNWQSSNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLKDKSGNSVYVGRTPVLGGDH
IVDARASIGEMGMAEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV
>Mature_604_residues
MERKPNQRLLNHYSAWKYVVLVVTLIVMLFSALPTFYGEDAAVQVGAKAGLTLAPVALRDKLQAEGVTVKRIDQKNGETL
IVLDEDSQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAEALVDSLR
QFIREQNIRGASVHLDQSSQLNVTLPDNDARAAVRQMMKQSYPNWQSSNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLKDKSGNSVYVGRTPVLGGDH
IVDARASIGEMGMAEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=606, Percent_Identity=42.5742574257426, Blast_Score=496, Evalue=1e-141,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65616; Mature: 65616

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKPNQRLLNHYSAWKYVVLVVTLIVMLFSALPTFYGEDAAVQVGAKAGLTLAPVALRD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEHHHHHH
KLQAEGVTVKRIDQKNGETLIVLDEDSQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQN
HHHHCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
LGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAEALVDSLRQFIREQNIRGASVHLDQSSQ
CCCCEEEECEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCE
LNVTLPDNDARAAVRQMMKQSYPNWQSSNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMR
EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHCHHHHHHHHHH
SRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCHHHEEEEEEECCCCEEEEEE
KDKSGNSVYVGRTPVLGGDHIVDARASIGEMGMAEVNINLDRVGGQKMSEFSRTNIGKPM
EECCCCEEEEECCCCCCCCCEEECHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCC
ATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTA
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
CEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASR
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HVRV
CCCC
>Mature Secondary Structure
MERKPNQRLLNHYSAWKYVVLVVTLIVMLFSALPTFYGEDAAVQVGAKAGLTLAPVALRD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEHHHHHH
KLQAEGVTVKRIDQKNGETLIVLDEDSQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQN
HHHHCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
LGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAEALVDSLRQFIREQNIRGASVHLDQSSQ
CCCCEEEECEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCE
LNVTLPDNDARAAVRQMMKQSYPNWQSSNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMR
EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHCHHHHHHHHHH
SRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCHHHEEEEEEECCCCEEEEEE
KDKSGNSVYVGRTPVLGGDHIVDARASIGEMGMAEVNINLDRVGGQKMSEFSRTNIGKPM
EECCCCEEEEECCCCCCCCCEEECHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCC
ATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTA
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
CEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASR
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HVRV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]