| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is foxA [H]
Identifier: 120597852
GI number: 120597852
Start: 1166669
End: 1168813
Strand: Direct
Name: foxA [H]
Synonym: Sputw3181_1022
Alternate gene names: 120597852
Gene position: 1166669-1168813 (Clockwise)
Preceding gene: 120597851
Following gene: 120597853
Centisome position: 24.78
GC content: 43.92
Gene sequence:
>2145_bases ATGACTTATTTAGCTTTCCCAAAGCGCGTAGCGCTTTTACTGGGCGCTTTCGTTGCGTTCAATTCTCCAATGGTGTTTGC CGCGAAGGAGCTTCAATCGAATGAACAAATTACCGATTCAGATATTGAGCGTTTAAGTATCCATTATCGTCAAGCCTACC GTGGTAATGTACCCGCAGAGGCACTTCCCCAAGCGATTAGTGTGCTGGATGAACAATTAATAAAAGATGCGGGCCTGACA AGGTTTCAGGATGTTCTGGATTATTCTGCCAGTGTAGCGCGGCAAAATAATGGTGGTGGTTTATGGGATAGTTTTTCTTT GCGCGGTTTTCCGGGCAATGAAAATATGCCATCGGGTTATTTAATTAATGGCTTTAATGGTGGACGAGGCTTTAGTGGCC ATAGGGATTTGTCTAATGTCGCCTATGTGGAAATATTAAAAGGCCCAGGTTCTGCGCTTTATGGGCGTTCTGAACCTGGT GGCACAGTCAATATCGTGACTAAGAAACCCCAATATGAAAGCAGTGGTTATTTAAAGGCATCGGCTGGGAGTTTCGACCA ATATCGGTTAGAAGGCGATGTTACCTCTGGTTTAACCGAGTCTGTGGCGTTTCGGATCAATGGCGCTTGGCAGGAATACG ATAGTTTTCGTGATTATGTGTTTAGTGATAAGAAAATCGTTACGCCTTCTGTACGTTGGCAGGTTTCCGATAAAGCCTCA TTACTCTATGAGCTTGAGTATCTTAAACAGGAGCAGTTATTTGACCGCGGTTTTATCGTACTCAATAACGATATCAAGAC AGTGCCGCGTTCACGTTATCTAGGTGAGCCTAATGATGGCGCAACGAAGGTGAATGCCACTGGGCATCAACTGACCTATG ACTATGAATTAAATGATGATTGGTCATTAACGGCGGGTTATAACTATCGCGATTCCACCTTAAAGGGATTTTCCTCCGAT GCTGAGCTGGCAGCGGGGCGTCAATCCTTGTTTGATGATGGCCGAACACTGACTCGCCAGCATCGATATAGGGATTATGC CTCAGAGGATAATTCCCTTCGTCTTGAATTAAGTGGTCATCTTGATACGGGTTTTATTCGTCATAATTTGCTGCTTGGTG CCGATGCCTACCACTACAACCTGAAGACGGGGCTTTATCGCTATCGAGGCAAAAAAGGCGAATATGCCATCGATATTTTT GAGCCGCAATATGGCAGCGTTCAACCTGAGGTAAGTTTACTGTATGAGAATGAGGAAACTCAGAAGGCATGGGGCACTTA TCTTCAAGATCAAATGGATTTAACTGAAAAGTGGAAATTACATTTAGGACTGAGGTTTGATAGTTATCAGCAAGATATTC GTGAAACGGCTAAAGAGACGCTATCGGAACAAACCGATAATCGGGTTAGCCCTAAAGTGGGTCTCGTCTATTTGTGGTCA GATGCATTAAATTTTTATAGTTCTTACTCTGAAGGATTTTTACCGCTTTCAGGAACTGACTATGCGGGGAATCCATTTGA AGCTGAAGAAAGTCAATCTGTAGAGCTGGGCATGAAGTTTAATGCTGCTTGGCTTAACGACCTTGCCATAAATGGTAGTT TAGCCGTGTTTGATGCCAAAAAGAGCAATATTTTAACCTCAGATCCTGTGAATGTAGGGTTTTCGGCTACTTTGGGGGAA GCGAAAAGTACAGGACTTGAATTAGATATCGCGGCCGATCTGACTGAGTCATTACAAGGCAGACTATCCTATGCCTATCT TAATACGCGTACAGCCAACGATACTTTGAATGTTGACTTTGGCGTACAAATACCCGCAGGAAGTCCACTGGTTAACGTGC CTAAACAAACCGCAAGTATTCTGTTGAAACAAGATCTCAATGATTTTTCCATTGATGGGCATTTGGGATTAAGTTGGCGC TATATTGATTCGCGCCTCGGCGATTCTGCCGATCCTAGCTTTCAATTGCCTTCTTATCAGTTAGTTGGGTTGTTTATGAA CACCCACTTAAGCGACAACTTAAGCCTTGGTGTGAATCTGGATAACTTACTGGATGAACATTACATCGCGAGTAGCTATT CCGCTCTTTGGGCCGTGCCGGGTGAGCCACGTAGCATTAAAGTGAGTGTCAGCTATGAATTCTAA
Upstream 100 bases:
>100_bases CCGATAACAGCTTAATTTTCTGATTAAATTCATTAATTTATTGATTTTGTAGTGTCTTGGTTTTACTAAGGCGCTGATGC TGTTTATTTTCGGAGTGAAA
Downstream 100 bases:
>100_bases TATCAGTGCTAATCCAGCGTTATCTTCAGGTTTTACCGAGCAAGAACGGGGTCATTCTATTGGCCGCACCCGGATCAATA GTATCGATATGATGCGCGGT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 714; Mature: 713
Protein sequence:
>714_residues MTYLAFPKRVALLLGAFVAFNSPMVFAAKELQSNEQITDSDIERLSIHYRQAYRGNVPAEALPQAISVLDEQLIKDAGLT RFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGYLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPG GTVNIVTKKPQYESSGYLKASAGSFDQYRLEGDVTSGLTESVAFRINGAWQEYDSFRDYVFSDKKIVTPSVRWQVSDKAS LLYELEYLKQEQLFDRGFIVLNNDIKTVPRSRYLGEPNDGATKVNATGHQLTYDYELNDDWSLTAGYNYRDSTLKGFSSD AELAAGRQSLFDDGRTLTRQHRYRDYASEDNSLRLELSGHLDTGFIRHNLLLGADAYHYNLKTGLYRYRGKKGEYAIDIF EPQYGSVQPEVSLLYENEETQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDIRETAKETLSEQTDNRVSPKVGLVYLWS DALNFYSSYSEGFLPLSGTDYAGNPFEAEESQSVELGMKFNAAWLNDLAINGSLAVFDAKKSNILTSDPVNVGFSATLGE AKSTGLELDIAADLTESLQGRLSYAYLNTRTANDTLNVDFGVQIPAGSPLVNVPKQTASILLKQDLNDFSIDGHLGLSWR YIDSRLGDSADPSFQLPSYQLVGLFMNTHLSDNLSLGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF
Sequences:
>Translated_714_residues MTYLAFPKRVALLLGAFVAFNSPMVFAAKELQSNEQITDSDIERLSIHYRQAYRGNVPAEALPQAISVLDEQLIKDAGLT RFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGYLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPG GTVNIVTKKPQYESSGYLKASAGSFDQYRLEGDVTSGLTESVAFRINGAWQEYDSFRDYVFSDKKIVTPSVRWQVSDKAS LLYELEYLKQEQLFDRGFIVLNNDIKTVPRSRYLGEPNDGATKVNATGHQLTYDYELNDDWSLTAGYNYRDSTLKGFSSD AELAAGRQSLFDDGRTLTRQHRYRDYASEDNSLRLELSGHLDTGFIRHNLLLGADAYHYNLKTGLYRYRGKKGEYAIDIF EPQYGSVQPEVSLLYENEETQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDIRETAKETLSEQTDNRVSPKVGLVYLWS DALNFYSSYSEGFLPLSGTDYAGNPFEAEESQSVELGMKFNAAWLNDLAINGSLAVFDAKKSNILTSDPVNVGFSATLGE AKSTGLELDIAADLTESLQGRLSYAYLNTRTANDTLNVDFGVQIPAGSPLVNVPKQTASILLKQDLNDFSIDGHLGLSWR YIDSRLGDSADPSFQLPSYQLVGLFMNTHLSDNLSLGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF >Mature_713_residues TYLAFPKRVALLLGAFVAFNSPMVFAAKELQSNEQITDSDIERLSIHYRQAYRGNVPAEALPQAISVLDEQLIKDAGLTR FQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGYLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPGG TVNIVTKKPQYESSGYLKASAGSFDQYRLEGDVTSGLTESVAFRINGAWQEYDSFRDYVFSDKKIVTPSVRWQVSDKASL LYELEYLKQEQLFDRGFIVLNNDIKTVPRSRYLGEPNDGATKVNATGHQLTYDYELNDDWSLTAGYNYRDSTLKGFSSDA ELAAGRQSLFDDGRTLTRQHRYRDYASEDNSLRLELSGHLDTGFIRHNLLLGADAYHYNLKTGLYRYRGKKGEYAIDIFE PQYGSVQPEVSLLYENEETQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDIRETAKETLSEQTDNRVSPKVGLVYLWSD ALNFYSSYSEGFLPLSGTDYAGNPFEAEESQSVELGMKFNAAWLNDLAINGSLAVFDAKKSNILTSDPVNVGFSATLGEA KSTGLELDIAADLTESLQGRLSYAYLNTRTANDTLNVDFGVQIPAGSPLVNVPKQTASILLKQDLNDFSIDGHLGLSWRY IDSRLGDSADPSFQLPSYQLVGLFMNTHLSDNLSLGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=706, Percent_Identity=24.929178470255, Blast_Score=169, Evalue=7e-43, Organism=Escherichia coli, GI1787024, Length=740, Percent_Identity=21.8918918918919, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1787723, Length=605, Percent_Identity=24.1322314049587, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1787344, Length=302, Percent_Identity=24.5033112582781, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79577; Mature: 79446
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYLAFPKRVALLLGAFVAFNSPMVFAAKELQSNEQITDSDIERLSIHYRQAYRGNVPAE CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHH ALPQAISVLDEQLIKDAGLTRFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGY HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCEECCCCCCCCCCCCE LINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPGGTVNIVTKKPQYESSGYLKA EEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE SAGSFDQYRLEGDVTSGLTESVAFRINGAWQEYDSFRDYVFSDKKIVTPSVRWQVSDKAS CCCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEECCCEEEEECCHHH LLYELEYLKQEQLFDRGFIVLNNDIKTVPRSRYLGEPNDGATKVNATGHQLTYDYELNDD HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCCCEEEECCCCEEEEEEECCCC WSLTAGYNYRDSTLKGFSSDAELAAGRQSLFDDGRTLTRQHRYRDYASEDNSLRLELSGH EEEEECCCCCCCHHCCCCCCHHHHHCHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECC LDTGFIRHNLLLGADAYHYNLKTGLYRYRGKKGEYAIDIFEPQYGSVQPEVSLLYENEET CCCCEEEEEEEEECCEEEEEHHHHHHEECCCCCCEEEEEECCCCCCCCCCEEEEEECCHH QKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDIRETAKETLSEQTDNRVSPKVGLVYLWS HHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEH DALNFYSSYSEGFLPLSGTDYAGNPFEAEESQSVELGMKFNAAWLNDLAINGSLAVFDAK HHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCEEHEEEEECCCEEEEECC KSNILTSDPVNVGFSATLGEAKSTGLELDIAADLTESLQGRLSYAYLNTRTANDTLNVDF CCCCEECCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHCCEEEEEEEEECCCCEEEEEE GVQIPAGSPLVNVPKQTASILLKQDLNDFSIDGHLGLSWRYIDSRLGDSADPSFQLPSYQ EEECCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEEHHHCCCCCCCCCCCCCCE LVGLFMNTHLSDNLSLGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF EEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECC >Mature Secondary Structure TYLAFPKRVALLLGAFVAFNSPMVFAAKELQSNEQITDSDIERLSIHYRQAYRGNVPAE CCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHH ALPQAISVLDEQLIKDAGLTRFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGY HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCEECCCCCCCCCCCCE LINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPGGTVNIVTKKPQYESSGYLKA EEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE SAGSFDQYRLEGDVTSGLTESVAFRINGAWQEYDSFRDYVFSDKKIVTPSVRWQVSDKAS CCCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEECCCEEEEECCHHH LLYELEYLKQEQLFDRGFIVLNNDIKTVPRSRYLGEPNDGATKVNATGHQLTYDYELNDD HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCCCEEEECCCCEEEEEEECCCC WSLTAGYNYRDSTLKGFSSDAELAAGRQSLFDDGRTLTRQHRYRDYASEDNSLRLELSGH EEEEECCCCCCCHHCCCCCCHHHHHCHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECC LDTGFIRHNLLLGADAYHYNLKTGLYRYRGKKGEYAIDIFEPQYGSVQPEVSLLYENEET CCCCEEEEEEEEECCEEEEEHHHHHHEECCCCCCEEEEEECCCCCCCCCCEEEEEECCHH QKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDIRETAKETLSEQTDNRVSPKVGLVYLWS HHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEH DALNFYSSYSEGFLPLSGTDYAGNPFEAEESQSVELGMKFNAAWLNDLAINGSLAVFDAK HHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCEEHEEEEECCCEEEEECC KSNILTSDPVNVGFSATLGEAKSTGLELDIAADLTESLQGRLSYAYLNTRTANDTLNVDF CCCCEECCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHCCEEEEEEEEECCCCEEEEEE GVQIPAGSPLVNVPKQTASILLKQDLNDFSIDGHLGLSWRYIDSRLGDSADPSFQLPSYQ EEECCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEEHHHCCCCCCCCCCCCCCE LVGLFMNTHLSDNLSLGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF EEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 10103258; 7642488 [H]