| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120597853
Identifier: 120597853
GI number: 120597853
Start: 1168803
End: 1170059
Strand: Direct
Name: 120597853
Synonym: Sputw3181_1023
Alternate gene names: NA
Gene position: 1168803-1170059 (Clockwise)
Preceding gene: 120597852
Following gene: 120597855
Centisome position: 24.82
GC content: 46.3
Gene sequence:
>1257_bases ATGAATTCTAATATCAGTGCTAATCCAGCGTTATCTTCAGGTTTTACCGAGCAAGAACGGGGTCATTCTATTGGCCGCAC CCGGATCAATAGTATCGATATGATGCGCGGTATGGTGATGCTTATCATGTTACTCGACCATGTGAGGGAGCGGTTTTTCT TTCACATGCAGGTGAGCGATCCTATGGATTTGAGTTCGACCTCTTGGGGGCTTTTTCTGAGTCGTTTTGCTGCCCATTTT TGTGCCCCGGTCTTTGTGTTCTTAACCGGGGTTTCTGCATGGCTTTATGCCAATCGTAGCCATGGTGAGCCACGTTCAGC ACGGGAGTTTTTGATTAAACGCGGGCTGTTTTTAATCGCGCTGGAAATTTTAGTGATTAACTTCTCTAACCTCTCTTGGA TGGTCAGCTATTACACCCTTTGGTTACAGGTGATTTGGGTGATTGGTCTGAGTATGTTAGCGCTCGCTGCACTGATAAAC CTGCCTAGACCTTGGATGGCCCTTTTAGGATTTGCGATTGTTTTTGGCCATAATCTGTTGACGCCTATTGGTTTTCAGCC CAATGAGTGGGCTTACGGTCTGTGGACCATATTGCACGACCGCGGCTATCTCGTCAGCGAAGGTGCGCTTAGGGTTAAGG TGAGTTATCCCGTGCTGCCTTGGATTGGAGTGATTTTACTGGGTTATGTTGCAGGGCCACTTTTTAGTAATAAGCCGAAC GGGAGCCATCTTGATGCATTAGCTCGCCAGCAAAAGCTGTTGTTTTTAGGGATCAGCTGTTGGGTACTTTTTGCGGTGCT ACGTGGGTTTAACCTTTATGGCGAAACCTTGCCTTGGCAGTCGGGGGCACATTTGGGTGAAACCTTGATGTCGGTATTTA ACTTAACGAAATACCCGCCATCATTAAGCTTTTTACTGGTGACTTTAGGCGGCATGTTCTTTTGCTTAGTGGCCTTTGAG CGGTATTTTGCATCAAGTGGGAAAGTGGGTGGGAGATTAGCGCGAGTCGGTAATGGGTTGTCTGTGTTTGGCTCAGTCCC TATGTTCTTCTATATCTTGCATTTGTACGTGCTGTTACTGCTTTATACTTTAGCGAAATTCATCTTTGGCGCAAACCATG GTGAGTACTTTGGCGTGAACAACATGGGATGGGTTTGGTTTATCGCGGGCGTATTAGCCATCGCATTGTATTATCCCGTT AAGCGATTTAGCGAGTATAAAAAACACAGCACTCAAGCTTGGATTAAGTACCTCTAA
Upstream 100 bases:
>100_bases AATCTGGATAACTTACTGGATGAACATTACATCGCGAGTAGCTATTCCGCTCTTTGGGCCGTGCCGGGTGAGCCACGTAG CATTAAAGTGAGTGTCAGCT
Downstream 100 bases:
>100_bases TCTATTTTGCGTGATCAAGCTTTAAAGGCAAAAGTCGCCAAGTGTTTACTTGGCGGCTTTTTTGCTTTGGTCAGAGCAAT AATCTATTTAGCGATTACTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MNSNISANPALSSGFTEQERGHSIGRTRINSIDMMRGMVMLIMLLDHVRERFFFHMQVSDPMDLSSTSWGLFLSRFAAHF CAPVFVFLTGVSAWLYANRSHGEPRSAREFLIKRGLFLIALEILVINFSNLSWMVSYYTLWLQVIWVIGLSMLALAALIN LPRPWMALLGFAIVFGHNLLTPIGFQPNEWAYGLWTILHDRGYLVSEGALRVKVSYPVLPWIGVILLGYVAGPLFSNKPN GSHLDALARQQKLLFLGISCWVLFAVLRGFNLYGETLPWQSGAHLGETLMSVFNLTKYPPSLSFLLVTLGGMFFCLVAFE RYFASSGKVGGRLARVGNGLSVFGSVPMFFYILHLYVLLLLYTLAKFIFGANHGEYFGVNNMGWVWFIAGVLAIALYYPV KRFSEYKKHSTQAWIKYL
Sequences:
>Translated_418_residues MNSNISANPALSSGFTEQERGHSIGRTRINSIDMMRGMVMLIMLLDHVRERFFFHMQVSDPMDLSSTSWGLFLSRFAAHF CAPVFVFLTGVSAWLYANRSHGEPRSAREFLIKRGLFLIALEILVINFSNLSWMVSYYTLWLQVIWVIGLSMLALAALIN LPRPWMALLGFAIVFGHNLLTPIGFQPNEWAYGLWTILHDRGYLVSEGALRVKVSYPVLPWIGVILLGYVAGPLFSNKPN GSHLDALARQQKLLFLGISCWVLFAVLRGFNLYGETLPWQSGAHLGETLMSVFNLTKYPPSLSFLLVTLGGMFFCLVAFE RYFASSGKVGGRLARVGNGLSVFGSVPMFFYILHLYVLLLLYTLAKFIFGANHGEYFGVNNMGWVWFIAGVLAIALYYPV KRFSEYKKHSTQAWIKYL >Mature_418_residues MNSNISANPALSSGFTEQERGHSIGRTRINSIDMMRGMVMLIMLLDHVRERFFFHMQVSDPMDLSSTSWGLFLSRFAAHF CAPVFVFLTGVSAWLYANRSHGEPRSAREFLIKRGLFLIALEILVINFSNLSWMVSYYTLWLQVIWVIGLSMLALAALIN LPRPWMALLGFAIVFGHNLLTPIGFQPNEWAYGLWTILHDRGYLVSEGALRVKVSYPVLPWIGVILLGYVAGPLFSNKPN GSHLDALARQQKLLFLGISCWVLFAVLRGFNLYGETLPWQSGAHLGETLMSVFNLTKYPPSLSFLLVTLGGMFFCLVAFE RYFASSGKVGGRLARVGNGLSVFGSVPMFFYILHLYVLLLLYTLAKFIFGANHGEYFGVNNMGWVWFIAGVLAIALYYPV KRFSEYKKHSTQAWIKYL
Specific function: Unknown
COG id: COG3503
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47211; Mature: 47211
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSNISANPALSSGFTEQERGHSIGRTRINSIDMMRGMVMLIMLLDHVRERFFFHMQVSD CCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC PMDLSSTSWGLFLSRFAAHFCAPVFVFLTGVSAWLYANRSHGEPRSAREFLIKRGLFLIA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHH LEILVINFSNLSWMVSYYTLWLQVIWVIGLSMLALAALINLPRPWMALLGFAIVFGHNLL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHC TPIGFQPNEWAYGLWTILHDRGYLVSEGALRVKVSYPVLPWIGVILLGYVAGPLFSNKPN CCCCCCCCCCHHHHHHHHHCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC GSHLDALARQQKLLFLGISCWVLFAVLRGFNLYGETLPWQSGAHLGETLMSVFNLTKYPP CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC SLSFLLVTLGGMFFCLVAFERYFASSGKVGGRLARVGNGLSVFGSVPMFFYILHLYVLLL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LYTLAKFIFGANHGEYFGVNNMGWVWFIAGVLAIALYYPVKRFSEYKKHSTQAWIKYL HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNSNISANPALSSGFTEQERGHSIGRTRINSIDMMRGMVMLIMLLDHVRERFFFHMQVSD CCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC PMDLSSTSWGLFLSRFAAHFCAPVFVFLTGVSAWLYANRSHGEPRSAREFLIKRGLFLIA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHH LEILVINFSNLSWMVSYYTLWLQVIWVIGLSMLALAALINLPRPWMALLGFAIVFGHNLL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHC TPIGFQPNEWAYGLWTILHDRGYLVSEGALRVKVSYPVLPWIGVILLGYVAGPLFSNKPN CCCCCCCCCCHHHHHHHHHCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC GSHLDALARQQKLLFLGISCWVLFAVLRGFNLYGETLPWQSGAHLGETLMSVFNLTKYPP CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC SLSFLLVTLGGMFFCLVAFERYFASSGKVGGRLARVGNGLSVFGSVPMFFYILHLYVLLL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LYTLAKFIFGANHGEYFGVNNMGWVWFIAGVLAIALYYPVKRFSEYKKHSTQAWIKYL HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA