| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597154
Identifier: 120597154
GI number: 120597154
Start: 351366
End: 352676
Strand: Direct
Name: 120597154
Synonym: Sputw3181_0323
Alternate gene names: NA
Gene position: 351366-352676 (Clockwise)
Preceding gene: 120597153
Following gene: 120597155
Centisome position: 7.46
GC content: 39.21
Gene sequence:
>1311_bases ATGAGTTTTCGAAAAAGCGACCAAAAGTTAAAAGTCATCCTCAGTGCTGTAAATGTATGGAAAGAGCAATGCCTGCTCCA ATCCCGAGGGGTTTTTTCTAATACAAGAACATGGAATTACGCGAATTTTGAAAAGTTATATGAGGATTTTGTCAAACACC CAGATCCTAGTTCTGATAAAGATTTTTTTACCAAACTTGAGCACCAACTGAGGAATTCATCAGCAAATACTATAAGGCTC GCAGCTGAAATGCTTTGGTTTATGTCCTTGGCTTCAATAAACATTTCGACAAGGACAAAAAGAAGCAACATTAAACGAGT GTGGGAATGGAGTGGAGAAGCATTTGATGAGGGGCATCAACTACTCACAGATGGCGTTTTAGGTGGATACGCAAAAACGG GGGTAAGTTTTAATACCAATCGTTGGCGAGAACTCACTTATTTTATCAATGTGATGTTGGCATTTTACAAAGAGAAACCA GAAAAGCGGGGCGAGTTACTTGCTGAGGGGCAGACCTTAGCGCAATGGTTAGAAGGAATAGAAGATACTTCTAACCGTCA ATTCAGGCATATCCTTCTGTTTTTATTGTTCCCCAAGCAATTTGAGCGGATAACCAGTAATACGCAGCGTAAGCAAATTG TACAAGCTTTTGAGAACATAACATCAAGGCAAGTTAATAAGTTGTTTTGTTGGCAAATTGATGAGCTTTTACTGGGTATT CGAAAACGAGAATCTAAGCGGTTAGGTACAGATGATATTGAATTTTATCGTTCACCGCTGAAAGAGGTATGGGATCCAGT TGACTCAGAAATTATGACTGAGGATGAGCAGGATATAAGTGATGAGCAGAAAGCAATAAAAGATGAAGAGCAACGAAGCA AGGAAATCGAGCAGAGTAGCAGAAGTGATAAAAATAAGAAGCAGCTTATCGAAGCTCGCAATGGACACGGTAAGTATCGA AAAAACTTATCGAAAGTTGAAACTGATTGCCGGATCACGAAAATTAAGGATAAAAAGTTCCTTACAGCAAGTCATATAAA GCCGTGGCGTCATTGCAATGATAAAGAGTGTCTTGATGGATACAACGGCCTTTGGTTAGCCCCTCATATTGATCGTTTGT TCGACAGAGGGTGGATAACCTTTGATTGCTCAAGTGGAGCATTGCTTTGTGCCAATGCTAATGTGGAAAGAGTATTAGAA TTGTGGGGCATAGAGCAGGGTACATCTATTGATACTCTTAAAAAAGAGCAGGCTCATTATATGAAATACCATAATGAGCA GATTTTTAAAGGAAATGCAAAGAAAAAATAG
Upstream 100 bases:
>100_bases CGATTACCGTGAGTGCAAAGAGTGGTTGAGAGATCACGCTCAATTGCTGGTGGTGTAGTGGGGCAATCGTTCAAATCCAT TATATAAAGGGAATTAATAA
Downstream 100 bases:
>100_bases CCACTCTTTTCCTTAATTCGGGATGTCGAGATTAAGGAATGTCACCTTGGTGGTTAAGTTTTTAAGGATGGATAGAGCAT GGACTTCTTTGAATATTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MSFRKSDQKLKVILSAVNVWKEQCLLQSRGVFSNTRTWNYANFEKLYEDFVKHPDPSSDKDFFTKLEHQLRNSSANTIRL AAEMLWFMSLASINISTRTKRSNIKRVWEWSGEAFDEGHQLLTDGVLGGYAKTGVSFNTNRWRELTYFINVMLAFYKEKP EKRGELLAEGQTLAQWLEGIEDTSNRQFRHILLFLLFPKQFERITSNTQRKQIVQAFENITSRQVNKLFCWQIDELLLGI RKRESKRLGTDDIEFYRSPLKEVWDPVDSEIMTEDEQDISDEQKAIKDEEQRSKEIEQSSRSDKNKKQLIEARNGHGKYR KNLSKVETDCRITKIKDKKFLTASHIKPWRHCNDKECLDGYNGLWLAPHIDRLFDRGWITFDCSSGALLCANANVERVLE LWGIEQGTSIDTLKKEQAHYMKYHNEQIFKGNAKKK
Sequences:
>Translated_436_residues MSFRKSDQKLKVILSAVNVWKEQCLLQSRGVFSNTRTWNYANFEKLYEDFVKHPDPSSDKDFFTKLEHQLRNSSANTIRL AAEMLWFMSLASINISTRTKRSNIKRVWEWSGEAFDEGHQLLTDGVLGGYAKTGVSFNTNRWRELTYFINVMLAFYKEKP EKRGELLAEGQTLAQWLEGIEDTSNRQFRHILLFLLFPKQFERITSNTQRKQIVQAFENITSRQVNKLFCWQIDELLLGI RKRESKRLGTDDIEFYRSPLKEVWDPVDSEIMTEDEQDISDEQKAIKDEEQRSKEIEQSSRSDKNKKQLIEARNGHGKYR KNLSKVETDCRITKIKDKKFLTASHIKPWRHCNDKECLDGYNGLWLAPHIDRLFDRGWITFDCSSGALLCANANVERVLE LWGIEQGTSIDTLKKEQAHYMKYHNEQIFKGNAKKK >Mature_435_residues SFRKSDQKLKVILSAVNVWKEQCLLQSRGVFSNTRTWNYANFEKLYEDFVKHPDPSSDKDFFTKLEHQLRNSSANTIRLA AEMLWFMSLASINISTRTKRSNIKRVWEWSGEAFDEGHQLLTDGVLGGYAKTGVSFNTNRWRELTYFINVMLAFYKEKPE KRGELLAEGQTLAQWLEGIEDTSNRQFRHILLFLLFPKQFERITSNTQRKQIVQAFENITSRQVNKLFCWQIDELLLGIR KRESKRLGTDDIEFYRSPLKEVWDPVDSEIMTEDEQDISDEQKAIKDEEQRSKEIEQSSRSDKNKKQLIEARNGHGKYRK NLSKVETDCRITKIKDKKFLTASHIKPWRHCNDKECLDGYNGLWLAPHIDRLFDRGWITFDCSSGALLCANANVERVLEL WGIEQGTSIDTLKKEQAHYMKYHNEQIFKGNAKKK
Specific function: Unknown
COG id: COG3440
COG function: function code V; Predicted restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51203; Mature: 51071
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFRKSDQKLKVILSAVNVWKEQCLLQSRGVFSNTRTWNYANFEKLYEDFVKHPDPSSDK CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCH DFFTKLEHQLRNSSANTIRLAAEMLWFMSLASINISTRTKRSNIKRVWEWSGEAFDEGHQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH LLTDGVLGGYAKTGVSFNTNRWRELTYFINVMLAFYKEKPEKRGELLAEGQTLAQWLEGI HHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHH EDTSNRQFRHILLFLLFPKQFERITSNTQRKQIVQAFENITSRQVNKLFCWQIDELLLGI HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKRESKRLGTDDIEFYRSPLKEVWDPVDSEIMTEDEQDISDEQKAIKDEEQRSKEIEQSS HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHH RSDKNKKQLIEARNGHGKYRKNLSKVETDCRITKIKDKKFLTASHIKPWRHCNDKECLDG CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHCCCHHHCCCCHHHHCC YNGLWLAPHIDRLFDRGWITFDCSSGALLCANANVERVLELWGIEQGTSIDTLKKEQAHY CCCEEECHHHHHHHHCCCEEEECCCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHH MKYHNEQIFKGNAKKK HHHCCCHHCCCCCCCC >Mature Secondary Structure SFRKSDQKLKVILSAVNVWKEQCLLQSRGVFSNTRTWNYANFEKLYEDFVKHPDPSSDK CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCH DFFTKLEHQLRNSSANTIRLAAEMLWFMSLASINISTRTKRSNIKRVWEWSGEAFDEGHQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH LLTDGVLGGYAKTGVSFNTNRWRELTYFINVMLAFYKEKPEKRGELLAEGQTLAQWLEGI HHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHH EDTSNRQFRHILLFLLFPKQFERITSNTQRKQIVQAFENITSRQVNKLFCWQIDELLLGI HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKRESKRLGTDDIEFYRSPLKEVWDPVDSEIMTEDEQDISDEQKAIKDEEQRSKEIEQSS HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHH RSDKNKKQLIEARNGHGKYRKNLSKVETDCRITKIKDKKFLTASHIKPWRHCNDKECLDG CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHCCCHHHCCCCHHHHCC YNGLWLAPHIDRLFDRGWITFDCSSGALLCANANVERVLELWGIEQGTSIDTLKKEQAHY CCCEEECHHHHHHHHCCCEEEECCCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHH MKYHNEQIFKGNAKKK HHHCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA