| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597153
Identifier: 120597153
GI number: 120597153
Start: 350616
End: 351323
Strand: Direct
Name: 120597153
Synonym: Sputw3181_0322
Alternate gene names: NA
Gene position: 350616-351323 (Clockwise)
Preceding gene: 120597152
Following gene: 120597154
Centisome position: 7.45
GC content: 50.42
Gene sequence:
>708_bases ATGCAAGAGATTGAAGTAATTAAACAAGCGGGCTACGAGGTGCGGGTTGAACGTACCTCGCGTCGAAAATCCGCCACCAT TAAAGTGGAGGAGGGCGTGGTTGCGGTGGTAGTGCCAAAAGCGCTGCCATCGGAGAAAGTCCACCAGCTGCTGGCCGCTA AGCATCAATGGATTCTCGAAAAGTTGGCGATTCATGCGGAGGCGCGGCCATTGCGTGGCAAGGAGTATGTCTCTGGCGAA GCATTCCCTTATTTAGGTCGTAACTATCGCTTGAAAGTCGTTAGCGGCAAAGTGAGCCCGACCAAATTGGTTGATGGGAA AATTACAGTTACTGTGCCTGAATATGCCAAGCAAGCGCATTTTGTGCGCCGTGCGTTAGTCCACTGGTATAAGCGCAACG CTGATAAGAAAATCCGTGAAAAGGTAGACCGCTATCAATCGGTTGTGGGGGTTGAAACGGCTGTAGTGCGCATCAAGGAC TTTAAGAGTCGTTGGGGCAGTTGTACCCCTTACGGCGACTTAGAATTTAACTGGCTGATTGTGTTAGCACCTAACCGCAT CGTTGATTATGTTGTCGTACATGAGCTTTGCCATTTGCTGCATCACGACCACTCGCCACAATTCTGGAAAGAGGTTGAGC GGGTGATGCCCGATTACCGTGAGTGCAAAGAGTGGTTGAGAGATCACGCTCAATTGCTGGTGGTGTAG
Upstream 100 bases:
>100_bases TGGAGCAGCCTTTTGGCGATAAAGCGCTGGTGGCAACGCTGCAAGACCGCTTTGTTGAACTGGCTAAGCACAAGTTTGGC AATAAGTGACAGCCGCCGCG
Downstream 100 bases:
>100_bases TGGGGCAATCGTTCAAATCCATTATATAAAGGGAATTAATAAATGAGTTTTCGAAAAAGCGACCAAAAGTTAAAAGTCAT CCTCAGTGCTGTAAATGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Zinc Metallopeptidase; Zinc Metallopeptidases-Like Protein; Zinc Metallopeptidase-Like Protein; Zinc-Dependent Protease; Hydrolase; Zinc Metallopeptidase Protein; Protease
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MQEIEVIKQAGYEVRVERTSRRKSATIKVEEGVVAVVVPKALPSEKVHQLLAAKHQWILEKLAIHAEARPLRGKEYVSGE AFPYLGRNYRLKVVSGKVSPTKLVDGKITVTVPEYAKQAHFVRRALVHWYKRNADKKIREKVDRYQSVVGVETAVVRIKD FKSRWGSCTPYGDLEFNWLIVLAPNRIVDYVVVHELCHLLHHDHSPQFWKEVERVMPDYRECKEWLRDHAQLLVV
Sequences:
>Translated_235_residues MQEIEVIKQAGYEVRVERTSRRKSATIKVEEGVVAVVVPKALPSEKVHQLLAAKHQWILEKLAIHAEARPLRGKEYVSGE AFPYLGRNYRLKVVSGKVSPTKLVDGKITVTVPEYAKQAHFVRRALVHWYKRNADKKIREKVDRYQSVVGVETAVVRIKD FKSRWGSCTPYGDLEFNWLIVLAPNRIVDYVVVHELCHLLHHDHSPQFWKEVERVMPDYRECKEWLRDHAQLLVV >Mature_235_residues MQEIEVIKQAGYEVRVERTSRRKSATIKVEEGVVAVVVPKALPSEKVHQLLAAKHQWILEKLAIHAEARPLRGKEYVSGE AFPYLGRNYRLKVVSGKVSPTKLVDGKITVTVPEYAKQAHFVRRALVHWYKRNADKKIREKVDRYQSVVGVETAVVRIKD FKSRWGSCTPYGDLEFNWLIVLAPNRIVDYVVVHELCHLLHHDHSPQFWKEVERVMPDYRECKEWLRDHAQLLVV
Specific function: Unknown
COG id: COG1451
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27323; Mature: 27323
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEIEVIKQAGYEVRVERTSRRKSATIKVEEGVVAVVVPKALPSEKVHQLLAAKHQWILE CCHHHHHHHCCCEEEEEHHCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHH KLAIHAEARPLRGKEYVSGEAFPYLGRNYRLKVVSGKVSPTKLVDGKITVTVPEYAKQAH HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCEEEEECHHHHHHHH FVRRALVHWYKRNADKKIREKVDRYQSVVGVETAVVRIKDFKSRWGSCTPYGDLEFNWLI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE VLAPNRIVDYVVVHELCHLLHHDHSPQFWKEVERVMPDYRECKEWLRDHAQLLVV EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHEECC >Mature Secondary Structure MQEIEVIKQAGYEVRVERTSRRKSATIKVEEGVVAVVVPKALPSEKVHQLLAAKHQWILE CCHHHHHHHCCCEEEEEHHCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHH KLAIHAEARPLRGKEYVSGEAFPYLGRNYRLKVVSGKVSPTKLVDGKITVTVPEYAKQAH HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCEEEEECHHHHHHHH FVRRALVHWYKRNADKKIREKVDRYQSVVGVETAVVRIKDFKSRWGSCTPYGDLEFNWLI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE VLAPNRIVDYVVVHELCHLLHHDHSPQFWKEVERVMPDYRECKEWLRDHAQLLVV EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA