| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is plsB [H]
Identifier: 120596969
GI number: 120596969
Start: 163225
End: 165648
Strand: Direct
Name: plsB [H]
Synonym: Sputw3181_0136
Alternate gene names: 120596969
Gene position: 163225-165648 (Clockwise)
Preceding gene: 120596957
Following gene: 120596970
Centisome position: 3.47
GC content: 43.56
Gene sequence:
>2424_bases ATGCCTAAACAAGACTCTCTTTGGTTGAAATCATTACGTTGGATCCAAAAACACTTAGTCCACACTATTGTGGTGCCTCA GGATCCTTTTGCCGATCTGAATCTGGATACCTCCAGACCACTTGCTTATGTCATGAAAACAGAATCGCTGAGTGACATTG CGGCACTAAGTGAAGTCACCGAAAAATTAGGCTTGCCAAGCCCCTACGAACCTTTAGTTGTTAACGGTGTTGTTGCGCCA CGGGTTGTTTGCCTTCAAGGACGTAAACCTTTGTTTGGTGAACGTGCGGGTAACGAGCCATTCCTTGAGTGTTTTATGCG TCTCTTGGCTGTTCATAAGGAGCGCCCGGAGCTTGATATTCAGTTAGTGCCAGTGAGTCTTTATTGGGGACGTACTCCAG GTAAAGAAGACGATACGATGAAAGCGGCTGTGTTGGAGCGTGAAAATCCAACTTGGCTACGTAAGTGCTTCATGATTTTG TTTCTAGGCCGTCATAATTTTGTACAGTTTTCGAATGCAGTTTCACTGCGTTATATGGCAGATGAACACGGTACTGATAT GGGGATAGCCCATAAATTAGCGCGTGTGGCACGGGTGCATTTTCGCCGCCAACGTAAGGTGATGACGGGTCCTTTACTGC CAAATCGTCAGGCATTATTTGATTCGTTGCTCAAATCGGAGTCATTACGTAAGGCGATTCAAGAAGAGGCTGTGAGCAAA AAGATTTCTGAAACTCAATCTCGTGAAACTGCAATTGAGTATCTTGATGAAATAGCAGCAAATTATTCAGATAGTTTAGT GCGCATTGCCGAGCGTTTTTTAACCTGGTTATGGAATAAGCTCTACAGTGGCATCAATATTAAAGGTGCCGAACATATTC GTCAGTTACACCATGATGGTCACGAAATTGTCTATGTGCCTTGTCATCGAAGTCATATGGATTATCTATTGCTATCCTAC ATTTTGTATTACCAAGGTATGGTGCCGCCGCATATTGCAGCAGGGATAAACCTTAACTTTTGGCCCGCGGGACCATTGTT CCGCCGTGGTGGCGCGTTCTTTATCCGTCGTAGTTTTAATGGTAATAAGCTTTATACCGCAGTCTTTCGTGAATATTTAG ATCAACTGTTTGCCAAGGGCTATTCGGTGGAGTATTTCTCTGAGGGCGGTCGGTCTCGTACGGGGCGTTTGTTAGCGCCC AAAACGGGCATGATAGCAATGACAATGAACAGCGTGCTGCGCGGAATTGAGCGCCCAGTTACTTTGGTTCCCGTATATTT AGGTTATGACCATGTGATGGAAGTCGCCACGTATCACAAAGAGTTAAGTGGCAAGAAAAAACAAAAAGAATCCGTTTGGC AAGTTTTTGGAGCTATTCGCAAGTTAGGTAATTTTGGTCAAGGTTATGTGAACTTTGGAGAGCCGATTACCCTGCAAACC TTTTTAAACGAAATGGCACCTAACTGGCGCGCAGAGCTTGCCGATGATCCTGAACAAAAGCCAACTTGGTTAACTCCAGC GGTTAACGTGTTAGCAAATCGGGTGATGACACGTATTAATGATGCGGCAGCGGCCAGTTCCGTCACGCTCACCAGTTTAG CTTTATTGGCTTCTGAGCAAAATGCGCTTGAGCGTTGTTTGTTAGAACGTCAGTTAGATTTGTACCTCACGCTGCTGAAG CGGGTGCCTTATACCTCTTTTACTTCTGTCGCGGAAGGTGATGGTAAGCATCTTGTTCAGCAGGGTATTGATTTAAATAA GTTTTCAGTATCCAGTGATCCTTTAGGTGAGATAGTGTCTATCGATGCTAATCAGGCCATTTCGATGACCTATTATCGCA ATAATATTATCCACTTATTTATTATTCCTTCTCTTATTGCGAGTTGTTTGACCCATAATGAGCAAAGTCAGCGACAGCAA ATTGTGGCAATCGTGAATGACTTTTATCCGTTGCTAAAGGCTGAGCTGTTTATGGGAATTAAGGATATACCTTCCTATGT CAATCAAGTGCTGGATCTCTTTATTGAGCAAGGCTTAATAACTGAGTCAGATAACTTATCAGTTGTAACGGAACATTCCA GTCAGTTGGTATTGCTCTCAGGATCGGTCAGTGAGACATTGCAACGCTATGCCATCATTTTTAATTTGCTAGCACATCGT CCTAAGATGGAACGTTCAGAACTCGAGTCTGAAAGCCATTTACTTGCTCAGCGTTTAGGGGCATTGCATGGCATTACAGC ACCAGAGTTTTACGATAAAAAACTCTACGGCACTTTGAGTGTTAAGTTAAAAGAGTTAGGTTATCTTTCTGATAAAGATG ATAAATCTGATGTTAAGCGTATTCGAGATCAAGCCAATAGCCTATTGAGAGCCTCAGTGAGACAGACGATAGTTGCGAGT GTCACTGCGGAGCATATTAGTTAA
Upstream 100 bases:
>100_bases TGTTAGGGCGATTTAGGGATATATAGGAGAGAATTAGCGAATACTCCCCAGAGTCTGGTATTCTATTGGGCTAGTAAACG TACTTAATTGCATAAGAATA
Downstream 100 bases:
>100_bases TGACAAATCATATGAATGCGGTTAAGCATAAAACCGCAGGTAAGTCTTTGCTCGGTGGCGCCATGATTATTGCTGGGACG ACCGTAGGGGCGGGCATGTT
Product: glycerol-3-phosphate acyltransferase
Products: NA
Alternate protein names: GPAT [H]
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MPKQDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDTSRPLAYVMKTESLSDIAALSEVTEKLGLPSPYEPLVVNGVVAP RVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDIQLVPVSLYWGRTPGKEDDTMKAAVLERENPTWLRKCFMIL FLGRHNFVQFSNAVSLRYMADEHGTDMGIAHKLARVARVHFRRQRKVMTGPLLPNRQALFDSLLKSESLRKAIQEEAVSK KISETQSRETAIEYLDEIAANYSDSLVRIAERFLTWLWNKLYSGINIKGAEHIRQLHHDGHEIVYVPCHRSHMDYLLLSY ILYYQGMVPPHIAAGINLNFWPAGPLFRRGGAFFIRRSFNGNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAP KTGMIAMTMNSVLRGIERPVTLVPVYLGYDHVMEVATYHKELSGKKKQKESVWQVFGAIRKLGNFGQGYVNFGEPITLQT FLNEMAPNWRAELADDPEQKPTWLTPAVNVLANRVMTRINDAAAASSVTLTSLALLASEQNALERCLLERQLDLYLTLLK RVPYTSFTSVAEGDGKHLVQQGIDLNKFSVSSDPLGEIVSIDANQAISMTYYRNNIIHLFIIPSLIASCLTHNEQSQRQQ IVAIVNDFYPLLKAELFMGIKDIPSYVNQVLDLFIEQGLITESDNLSVVTEHSSQLVLLSGSVSETLQRYAIIFNLLAHR PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLSDKDDKSDVKRIRDQANSLLRASVRQTIVAS VTAEHIS
Sequences:
>Translated_807_residues MPKQDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDTSRPLAYVMKTESLSDIAALSEVTEKLGLPSPYEPLVVNGVVAP RVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDIQLVPVSLYWGRTPGKEDDTMKAAVLERENPTWLRKCFMIL FLGRHNFVQFSNAVSLRYMADEHGTDMGIAHKLARVARVHFRRQRKVMTGPLLPNRQALFDSLLKSESLRKAIQEEAVSK KISETQSRETAIEYLDEIAANYSDSLVRIAERFLTWLWNKLYSGINIKGAEHIRQLHHDGHEIVYVPCHRSHMDYLLLSY ILYYQGMVPPHIAAGINLNFWPAGPLFRRGGAFFIRRSFNGNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAP KTGMIAMTMNSVLRGIERPVTLVPVYLGYDHVMEVATYHKELSGKKKQKESVWQVFGAIRKLGNFGQGYVNFGEPITLQT FLNEMAPNWRAELADDPEQKPTWLTPAVNVLANRVMTRINDAAAASSVTLTSLALLASEQNALERCLLERQLDLYLTLLK RVPYTSFTSVAEGDGKHLVQQGIDLNKFSVSSDPLGEIVSIDANQAISMTYYRNNIIHLFIIPSLIASCLTHNEQSQRQQ IVAIVNDFYPLLKAELFMGIKDIPSYVNQVLDLFIEQGLITESDNLSVVTEHSSQLVLLSGSVSETLQRYAIIFNLLAHR PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLSDKDDKSDVKRIRDQANSLLRASVRQTIVAS VTAEHIS >Mature_806_residues PKQDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDTSRPLAYVMKTESLSDIAALSEVTEKLGLPSPYEPLVVNGVVAPR VVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDIQLVPVSLYWGRTPGKEDDTMKAAVLERENPTWLRKCFMILF LGRHNFVQFSNAVSLRYMADEHGTDMGIAHKLARVARVHFRRQRKVMTGPLLPNRQALFDSLLKSESLRKAIQEEAVSKK ISETQSRETAIEYLDEIAANYSDSLVRIAERFLTWLWNKLYSGINIKGAEHIRQLHHDGHEIVYVPCHRSHMDYLLLSYI LYYQGMVPPHIAAGINLNFWPAGPLFRRGGAFFIRRSFNGNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAPK TGMIAMTMNSVLRGIERPVTLVPVYLGYDHVMEVATYHKELSGKKKQKESVWQVFGAIRKLGNFGQGYVNFGEPITLQTF LNEMAPNWRAELADDPEQKPTWLTPAVNVLANRVMTRINDAAAASSVTLTSLALLASEQNALERCLLERQLDLYLTLLKR VPYTSFTSVAEGDGKHLVQQGIDLNKFSVSSDPLGEIVSIDANQAISMTYYRNNIIHLFIIPSLIASCLTHNEQSQRQQI VAIVNDFYPLLKAELFMGIKDIPSYVNQVLDLFIEQGLITESDNLSVVTEHSSQLVLLSGSVSETLQRYAIIFNLLAHRP KMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLSDKDDKSDVKRIRDQANSLLRASVRQTIVASV TAEHIS
Specific function: De novo phospholipid biosynthesis; first step. [C]
COG id: COG2937
COG function: function code I; Glycerol-3-phosphate O-acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GPAT/DAPAT family [H]
Homologues:
Organism=Homo sapiens, GI7657134, Length=264, Percent_Identity=35.9848484848485, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI190358539, Length=550, Percent_Identity=24.3636363636364, Blast_Score=141, Evalue=2e-33, Organism=Escherichia coli, GI87082362, Length=791, Percent_Identity=49.3046776232617, Blast_Score=782, Evalue=0.0, Organism=Caenorhabditis elegans, GI71988723, Length=452, Percent_Identity=28.0973451327434, Blast_Score=152, Evalue=8e-37, Organism=Caenorhabditis elegans, GI25147672, Length=305, Percent_Identity=35.0819672131148, Blast_Score=150, Evalue=3e-36, Organism=Caenorhabditis elegans, GI71988728, Length=393, Percent_Identity=30.0254452926209, Blast_Score=143, Evalue=3e-34, Organism=Drosophila melanogaster, GI17864692, Length=325, Percent_Identity=31.6923076923077, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI24650754, Length=485, Percent_Identity=27.2164948453608, Blast_Score=138, Evalue=2e-32, Organism=Drosophila melanogaster, GI21357731, Length=484, Percent_Identity=27.2727272727273, Blast_Score=138, Evalue=2e-32, Organism=Drosophila melanogaster, GI24650752, Length=485, Percent_Identity=27.2164948453608, Blast_Score=138, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002123 - InterPro: IPR022284 [H]
Pfam domain/function: PF01553 Acyltransferase [H]
EC number: =2.3.1.15 [H]
Molecular weight: Translated: 91377; Mature: 91245
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKQDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDTSRPLAYVMKTESLSDIAALSEVT CCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH EKLGLPSPYEPLVVNGVVAPRVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDI HHCCCCCCCCCEEECCCHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE QLVPVSLYWGRTPGKEDDTMKAAVLERENPTWLRKCFMILFLGRHNFVQFSNAVSLRYMA EEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCEEEEEEC DEHGTDMGIAHKLARVARVHFRRQRKVMTGPLLPNRQALFDSLLKSESLRKAIQEEAVSK CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KISETQSRETAIEYLDEIAANYSDSLVRIAERFLTWLWNKLYSGINIKGAEHIRQLHHDG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC HEIVYVPCHRSHMDYLLLSYILYYQGMVPPHIAAGINLNFWPAGPLFRRGGAFFIRRSFN CEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCHHHHCCCEEEEEECCC GNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAPKTGMIAMTMNSVLRGIERPV CCCHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCE TLVPVYLGYDHVMEVATYHKELSGKKKQKESVWQVFGAIRKLGNFGQGYVNFGEPITLQT EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHH FLNEMAPNWRAELADDPEQKPTWLTPAVNVLANRVMTRINDAAAASSVTLTSLALLASEQ HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NALERCLLERQLDLYLTLLKRVPYTSFTSVAEGDGKHLVQQGIDLNKFSVSSDPLGEIVS HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHCCCCCCEEECCCCCCCCEEE IDANQAISMTYYRNNIIHLFIIPSLIASCLTHNEQSQRQQIVAIVNDFYPLLKAELFMGI ECCCCEEEEEEEECCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCH KDIPSYVNQVLDLFIEQGLITESDNLSVVTEHSSQLVLLSGSVSETLQRYAIIFNLLAHR HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCC PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLSDKDDKSDVKR CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHCCCCCCCCCHHHHHH IRDQANSLLRASVRQTIVASVTAEHIS HHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PKQDSLWLKSLRWIQKHLVHTIVVPQDPFADLNLDTSRPLAYVMKTESLSDIAALSEVT CCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH EKLGLPSPYEPLVVNGVVAPRVVCLQGRKPLFGERAGNEPFLECFMRLLAVHKERPELDI HHCCCCCCCCCEEECCCHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE QLVPVSLYWGRTPGKEDDTMKAAVLERENPTWLRKCFMILFLGRHNFVQFSNAVSLRYMA EEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCEEEEEEC DEHGTDMGIAHKLARVARVHFRRQRKVMTGPLLPNRQALFDSLLKSESLRKAIQEEAVSK CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KISETQSRETAIEYLDEIAANYSDSLVRIAERFLTWLWNKLYSGINIKGAEHIRQLHHDG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC HEIVYVPCHRSHMDYLLLSYILYYQGMVPPHIAAGINLNFWPAGPLFRRGGAFFIRRSFN CEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCHHHHCCCEEEEEECCC GNKLYTAVFREYLDQLFAKGYSVEYFSEGGRSRTGRLLAPKTGMIAMTMNSVLRGIERPV CCCHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCE TLVPVYLGYDHVMEVATYHKELSGKKKQKESVWQVFGAIRKLGNFGQGYVNFGEPITLQT EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHH FLNEMAPNWRAELADDPEQKPTWLTPAVNVLANRVMTRINDAAAASSVTLTSLALLASEQ HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NALERCLLERQLDLYLTLLKRVPYTSFTSVAEGDGKHLVQQGIDLNKFSVSSDPLGEIVS HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHCCCCCCEEECCCCCCCCEEE IDANQAISMTYYRNNIIHLFIIPSLIASCLTHNEQSQRQQIVAIVNDFYPLLKAELFMGI ECCCCEEEEEEEECCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCH KDIPSYVNQVLDLFIEQGLITESDNLSVVTEHSSQLVLLSGSVSETLQRYAIIFNLLAHR HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCC PKMERSELESESHLLAQRLGALHGITAPEFYDKKLYGTLSVKLKELGYLSDKDDKSDVKR CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHCCCCCCCCCHHHHHH IRDQANSLLRASVRQTIVASVTAEHIS HHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]