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The map label for this gene is yadE [H]

Identifier: 120596957

GI number: 120596957

Start: 151585

End: 152631

Strand: Direct

Name: yadE [H]

Synonym: Sputw3181_0124

Alternate gene names: 120596957

Gene position: 151585-152631 (Clockwise)

Preceding gene: 120596952

Following gene: 120596969

Centisome position: 3.22

GC content: 46.32

Gene sequence:

>1047_bases
ATGGTTAAACGTGCGTTATTGGCACTCTTCGGGTTGATGACTTTTTCGGCCAATGCCGTGGTCATTTTACAGTATCATCA
TGTGTCGGAAACTACGCCTGCGGCAACCAGCGTGACACCCGCGCAATTTCGTGAGCAAATGCAGTTTTTGGCTGATGACG
GTTTTAAGGTAATCCCACTTACTCAAGTGGTTGAGGCGATAAAGCAAAAACAAGATTTACCCGCTAAAACCGTGGCGATT
ACCTTTGATGATGGCTATCGCAGCATTGCCACTACGGCGCATCCTATCCTAAAGGAATTTGGATTCCCCTACACCTTGTT
TGTGGCAATAGAGCCAATTAAACAAAAGTTTACCGAGATGATGACCTGGGATGAACTCGTCAGATTATCAAAGGAAGGGG
CTGATATTGCCAACCATAGTTGGGCGCATGAGCACTTGATCCGCAGATTAGACAATGAATCACAGGCACAGTGGTTAGCG
CGGGTAACAACGAATATTCTCGAGACTGAGAAGGCGCTTGCGGATGCGACGGGTCACAATTTTAAAATGCTCGCCTATCC
CTATGGCGAATATAATCAAGCACTGCAAGATATGTTAACGCAAAATGGCTTTGTCGCTTTTGGTCAGCAATCTGGCGCCT
CGGGACCTTATTCACCTCTGACCGCTTTACCGCGTTTTCCCGTGGCAGGACAATATGCGGATTTAAAGAGTCTAAAGGCC
AAACTTTATAGCCTTAATATGCCAGTGCTTTCCCAAAACGTGAGTGACCCAGAGTTAAAAAATGGGCAATGGCGACCAGA
GTTGAGGCTCACGCTTGATATGAGTGATATTTCTGCCAAACAAGTTATGTGTTATATCCAAGGTCAAGGAGCAAAATCGC
CGACTTGGCTTAGCGAAACTGAATTTAGCGTACAGGCTGATTCGGCATTGCCTGCGGGACGCTCCCGTTATAACTGCACT
GCACCCAGTAAAACTCGTAATGGTTATTATTGGTTCTCTCAGCCTTGGGTAAGACCTAGGGATGACGGCTCTTGGATTAA
AGAATAA

Upstream 100 bases:

>100_bases
TAGGGCAAGCGCGAACAGTTGGCGATTTTTGTTGCCATTTAACAGTAGTGCGAGTGCGGTTGATTTTGCAGTAGTCATTG
ATATTGGAGGTATTCACATT

Downstream 100 bases:

>100_bases
TCATAGATTTGACTTGTATTGCGAGACTATTTTGCCAAAATCGCTAATGAGTTCGTTATTCAATATTTGCGGCGGTTGCC
CTAATGTCGCCGTAGGTTTG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MVKRALLALFGLMTFSANAVVILQYHHVSETTPAATSVTPAQFREQMQFLADDGFKVIPLTQVVEAIKQKQDLPAKTVAI
TFDDGYRSIATTAHPILKEFGFPYTLFVAIEPIKQKFTEMMTWDELVRLSKEGADIANHSWAHEHLIRRLDNESQAQWLA
RVTTNILETEKALADATGHNFKMLAYPYGEYNQALQDMLTQNGFVAFGQQSGASGPYSPLTALPRFPVAGQYADLKSLKA
KLYSLNMPVLSQNVSDPELKNGQWRPELRLTLDMSDISAKQVMCYIQGQGAKSPTWLSETEFSVQADSALPAGRSRYNCT
APSKTRNGYYWFSQPWVRPRDDGSWIKE

Sequences:

>Translated_348_residues
MVKRALLALFGLMTFSANAVVILQYHHVSETTPAATSVTPAQFREQMQFLADDGFKVIPLTQVVEAIKQKQDLPAKTVAI
TFDDGYRSIATTAHPILKEFGFPYTLFVAIEPIKQKFTEMMTWDELVRLSKEGADIANHSWAHEHLIRRLDNESQAQWLA
RVTTNILETEKALADATGHNFKMLAYPYGEYNQALQDMLTQNGFVAFGQQSGASGPYSPLTALPRFPVAGQYADLKSLKA
KLYSLNMPVLSQNVSDPELKNGQWRPELRLTLDMSDISAKQVMCYIQGQGAKSPTWLSETEFSVQADSALPAGRSRYNCT
APSKTRNGYYWFSQPWVRPRDDGSWIKE
>Mature_348_residues
MVKRALLALFGLMTFSANAVVILQYHHVSETTPAATSVTPAQFREQMQFLADDGFKVIPLTQVVEAIKQKQDLPAKTVAI
TFDDGYRSIATTAHPILKEFGFPYTLFVAIEPIKQKFTEMMTWDELVRLSKEGADIANHSWAHEHLIRRLDNESQAQWLA
RVTTNILETEKALADATGHNFKMLAYPYGEYNQALQDMLTQNGFVAFGQQSGASGPYSPLTALPRFPVAGQYADLKSLKA
KLYSLNMPVLSQNVSDPELKNGQWRPELRLTLDMSDISAKQVMCYIQGQGAKSPTWLSETEFSVQADSALPAGRSRYNCT
APSKTRNGYYWFSQPWVRPRDDGSWIKE

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=204, Percent_Identity=30.8823529411765, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787260, Length=248, Percent_Identity=24.1935483870968, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 39084; Mature: 39084

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKRALLALFGLMTFSANAVVILQYHHVSETTPAATSVTPAQFREQMQFLADDGFKVIPL
CHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEH
TQVVEAIKQKQDLPAKTVAITFDDGYRSIATTAHPILKEFGFPYTLFVAIEPIKQKFTEM
HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHH
MTWDELVRLSKEGADIANHSWAHEHLIRRLDNESQAQWLARVTTNILETEKALADATGHN
HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FKMLAYPYGEYNQALQDMLTQNGFVAFGQQSGASGPYSPLTALPRFPVAGQYADLKSLKA
EEEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
KLYSLNMPVLSQNVSDPELKNGQWRPELRLTLDMSDISAKQVMCYIQGQGAKSPTWLSET
HHHHCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
EFSVQADSALPAGRSRYNCTAPSKTRNGYYWFSQPWVRPRDDGSWIKE
CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVKRALLALFGLMTFSANAVVILQYHHVSETTPAATSVTPAQFREQMQFLADDGFKVIPL
CHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEH
TQVVEAIKQKQDLPAKTVAITFDDGYRSIATTAHPILKEFGFPYTLFVAIEPIKQKFTEM
HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHH
MTWDELVRLSKEGADIANHSWAHEHLIRRLDNESQAQWLARVTTNILETEKALADATGHN
HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FKMLAYPYGEYNQALQDMLTQNGFVAFGQQSGASGPYSPLTALPRFPVAGQYADLKSLKA
EEEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
KLYSLNMPVLSQNVSDPELKNGQWRPELRLTLDMSDISAKQVMCYIQGQGAKSPTWLSET
HHHHCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
EFSVQADSALPAGRSRYNCTAPSKTRNGYYWFSQPWVRPRDDGSWIKE
CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]