| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120596950
Identifier: 120596950
GI number: 120596950
Start: 143623
End: 144387
Strand: Direct
Name: 120596950
Synonym: Sputw3181_0117
Alternate gene names: NA
Gene position: 143623-144387 (Clockwise)
Preceding gene: 120596949
Following gene: 120596951
Centisome position: 3.05
GC content: 34.25
Gene sequence:
>765_bases ATGTGTAATAAAAATGTGGTATCTATTTTAGTCAGTGCAATCCTGTTTAGTGGTTCCGTGTATGCTGATATAAATAAAAC AAGCGTGGATTTAGGTTATAAGTTTTATACCAGTGACACAAAAGATGATAACCCAGGTGTTTTTAATCAACCCTTTGTAA AGTTAAATCATTTGGGAATTGCTGACTGGGGGACTTACTTTGCTAATCTTAAGTTAGAAAACCCAGCAGAAATCGCGGAA AATCAGAAGCATGTTGATGGTAAGACGACGATTAAGTCATTATTGATACTGGAAAATAAGCTGGGGGAATCGCAGTTTAA CTTCTGGACTCAGAACTTTATCTCTGCGAGTGAAACGCTAGTTGAAGATAACCTTTACCTAGGTTTGACTCATAACGCAA AAGTTCAAAATCTATCATTAAACTATGGTGTTGGTTTCAATTATACCATTGGTAATTTTTCACCCACATCAGAGAAGTTT AACGATTTATCAGGCTATGCTGTTGTTTTAAATGCAAAGTACCCCCTTGAATTGTTAGGGTTAAAACATAGTTTAAGTTT GAATTATGAAGCGCAAATTGATAGGGATAAAGCGCATCAAGCATTATTTTCATATAACAGCTATGGCCATCAGATAATCA CAACATTACAAACAAACATCACAGATTCAATATTTTCAAAGTTATATCTCACTCATTATGATAGTTGGGGGTCTCAATAT AATGATGGGTTTGAATACGGTATATCTATTGGTTATCAGTTTTAA
Upstream 100 bases:
>100_bases ATAGTAATCATGCGGTTCGTAGTAACTTTATTAAATAAAGTTTACGAGATGTGGGGGTATTTAAATATATTCCCTCATAA ACATGGTTGAGAGGGGCTCT
Downstream 100 bases:
>100_bases TGGGTTATCAGATTGTTTGAATTTTTAATATATAGAATCTCATTTAATTGGATGTTGTTCTATTTTTTATCAAGAATAAT AAGGGAATTGTAATGCATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MCNKNVVSILVSAILFSGSVYADINKTSVDLGYKFYTSDTKDDNPGVFNQPFVKLNHLGIADWGTYFANLKLENPAEIAE NQKHVDGKTTIKSLLILENKLGESQFNFWTQNFISASETLVEDNLYLGLTHNAKVQNLSLNYGVGFNYTIGNFSPTSEKF NDLSGYAVVLNAKYPLELLGLKHSLSLNYEAQIDRDKAHQALFSYNSYGHQIITTLQTNITDSIFSKLYLTHYDSWGSQY NDGFEYGISIGYQF
Sequences:
>Translated_254_residues MCNKNVVSILVSAILFSGSVYADINKTSVDLGYKFYTSDTKDDNPGVFNQPFVKLNHLGIADWGTYFANLKLENPAEIAE NQKHVDGKTTIKSLLILENKLGESQFNFWTQNFISASETLVEDNLYLGLTHNAKVQNLSLNYGVGFNYTIGNFSPTSEKF NDLSGYAVVLNAKYPLELLGLKHSLSLNYEAQIDRDKAHQALFSYNSYGHQIITTLQTNITDSIFSKLYLTHYDSWGSQY NDGFEYGISIGYQF >Mature_254_residues MCNKNVVSILVSAILFSGSVYADINKTSVDLGYKFYTSDTKDDNPGVFNQPFVKLNHLGIADWGTYFANLKLENPAEIAE NQKHVDGKTTIKSLLILENKLGESQFNFWTQNFISASETLVEDNLYLGLTHNAKVQNLSLNYGVGFNYTIGNFSPTSEKF NDLSGYAVVLNAKYPLELLGLKHSLSLNYEAQIDRDKAHQALFSYNSYGHQIITTLQTNITDSIFSKLYLTHYDSWGSQY NDGFEYGISIGYQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28577; Mature: 28577
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCNKNVVSILVSAILFSGSVYADINKTSVDLGYKFYTSDTKDDNPGVFNQPFVKLNHLGI CCCHHHHHHHHHHHHHCCCEEEECCCEEEEECEEEEECCCCCCCCCCCCCCCEEEEECCE ADWGTYFANLKLENPAEIAENQKHVDGKTTIKSLLILENKLGESQFNFWTQNFISASETL ECCCCEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHE VEDNLYLGLTHNAKVQNLSLNYGVGFNYTIGNFSPTSEKFNDLSGYAVVLNAKYPLELLG EECCEEEEEECCCEEEEEEEEECCCEEEEECCCCCCHHHHCCCCCEEEEEECCCCHHEEC LKHSLSLNYEAQIDRDKAHQALFSYNSYGHQIITTLQTNITDSIFSKLYLTHYDSWGSQY CEEHEECCEEEECCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCC NDGFEYGISIGYQF CCCEEEEEEEEECC >Mature Secondary Structure MCNKNVVSILVSAILFSGSVYADINKTSVDLGYKFYTSDTKDDNPGVFNQPFVKLNHLGI CCCHHHHHHHHHHHHHCCCEEEECCCEEEEECEEEEECCCCCCCCCCCCCCCEEEEECCE ADWGTYFANLKLENPAEIAENQKHVDGKTTIKSLLILENKLGESQFNFWTQNFISASETL ECCCCEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHE VEDNLYLGLTHNAKVQNLSLNYGVGFNYTIGNFSPTSEKFNDLSGYAVVLNAKYPLELLG EECCEEEEEECCCEEEEEEEEECCCEEEEECCCCCCHHHHCCCCCEEEEEECCCCHHEEC LKHSLSLNYEAQIDRDKAHQALFSYNSYGHQIITTLQTNITDSIFSKLYLTHYDSWGSQY CEEHEECCEEEECCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCC NDGFEYGISIGYQF CCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA