Click here to switch to the map view.

The map label for this gene is rfaH [H]

Identifier: 119947068

GI number: 119947068

Start: 4287209

End: 4287718

Strand: Direct

Name: rfaH [H]

Synonym: Ping_3466

Alternate gene names: 119947068

Gene position: 4287209-4287718 (Clockwise)

Preceding gene: 119947039

Following gene: 119947069

Centisome position: 94.03

GC content: 32.55

Gene sequence:

>510_bases
ATGAGCCTACAATGGTTTGTTGTATATTGTAAAAGCCGGGAAGAGTTACGTGCGCAAAGGAATTTAGAAAATCAGGGCGT
TTATTCTTTTTTTCCTAAAATATGCAAAGAAAAAATTTTACGCAGTAAAAAAAAGGTTGTAGAGGAGCCTCTATTTCCCA
GTTATCTGTTTGTTAATATTTCTAAAAATGATGAAAAATTTAGCGCTATTCGCTCGACCCGTGGTATTAATAATTTTGTA
AAATTTGGTCTTAGCATTGCAACCATTCCAGATCAGCAGATCAAAAAAATTGAGCAGTTATGCCACGTTAATAATAAACT
CGCAGTTAATAGTGAAGACGTCTATCAAAATGGAGACAAAATAGAAATTTTAAGCGGCCCCTTTAAAGGCTTAACGGCTA
TTTTTAATATCGAAGATGGGTTAGAACGTTCGATGTTATTGCTTAAGATTTTAAATCAGGATAATAATATTTCATTCAAA
AATTCAGCTCTAAAAAAAGTGGAAAGCTAA

Upstream 100 bases:

>100_bases
ATTAAAAACCTTGTTAATGGTGCTAAGGTAACAGATGGATTACAATAGGTTAAAAAACTCGGGGACTGCCTGCTTAATTT
AGCCAAAAAAAGGAACTGTC

Downstream 100 bases:

>100_bases
CCTATGTTTTTACTGCATCAATTTCAAAACGAACGTGCTGCACAAGCATTTTCTGATTATTTAAGTGCTATTGGTATTAA
AAACAACCTTCATCATGACG

Product: NusG antitermination factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSLQWFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNISKNDEKFSAIRSTRGINNFV
KFGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDKIEILSGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFK
NSALKKVES

Sequences:

>Translated_169_residues
MSLQWFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNISKNDEKFSAIRSTRGINNFV
KFGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDKIEILSGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFK
NSALKKVES
>Mature_168_residues
SLQWFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNISKNDEKFSAIRSTRGINNFVK
FGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDKIEILSGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFKN
SALKKVES

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=163, Percent_Identity=41.7177914110429, Blast_Score=124, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 19452; Mature: 19321

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQWFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNI
CCCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
SKNDEKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDK
CCCCHHHHHHHHHCCHHHHHHHCCCEEECCHHHHHHHHHHHCCCCCEEECCHHHHCCCCE
IEILSGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFKNSALKKVES
EEEECCCCCHHEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
SLQWFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNI
CCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
SKNDEKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDK
CCCCHHHHHHHHHCCHHHHHHHCCCEEECCHHHHHHHHHHHCCCCCEEECCHHHHCCCCE
IEILSGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFKNSALKKVES
EEEECCCCCHHEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]