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The map label for this gene is ccmB [H]

Identifier: 119946644

GI number: 119946644

Start: 3721776

End: 3722444

Strand: Reverse

Name: ccmB [H]

Synonym: Ping_3023

Alternate gene names: 119946644

Gene position: 3722444-3721776 (Counterclockwise)

Preceding gene: 119946645

Following gene: 119946643

Centisome position: 81.64

GC content: 41.11

Gene sequence:

>669_bases
ATGTTTAGCGCATTTTTTCAAGTCGTTGCTAAAGAGTTAAAAGGGGCTTTTCGTCACGGCAGTGATATTTTAAATCCGGT
TTGGTTTTTTATTATTGTTGTCACGCTCTTCCCCTTAGGTATTGGTACAGATCCCGCTTTACTGCAGCGCATTGCACCCG
GTATTATTTGGGTGGCTGCATTATTGGCGGCTTTATTATCCTTTGAGCGCTTATTTAAAGATGATTTTATTGACGGTTCA
TTAGAGCAGTTGATGTTGTCCCCTTTTCCGCTTGCGTGGCTGGTCAGCGCGAAGGTTTTTTCTCACTGGTTACTGACAGG
GTTGCCTCTTTTATTGGTTTCTCCGCTACTGGCGGCTTTTTTATCACTTGATATTGATACCTATTTTGCATTATTTTTAA
CGCTTTTAATCGGTACGCCCATTTTGAGTTTATTTGGTGCTATTGGTGTTGCACTGACAGTTGGCTTAAGAAAAGGGGGG
ATCCTATTGAGTTTAATTATGCTCCCGCTTAGTATTCCCATTTTAATTTTTTCGACAATGGCGATTGATGCCGCATCCTA
TGGACAATCCTATATAGGGTTATTAGCTTTATTAGGGGCAATGTTAATTACCGCCATTATTTTAGCGCCTTTTGCAATAG
CAGCATCATTGCGTGTCAGCGTCAGTTGA

Upstream 100 bases:

>100_bases
AAAGGGGGGATTGTTCTCCTCACTACACATCAGGATCTGAGGCTCGATGCTTCATTGTTACGGAAAATTCAATTAGGTGG
GGTTGCTGCCGGTGAAGAAT

Downstream 100 bases:

>100_bases
TAATATGCACTTATTATTTGATCCTAAAACCTAAAACCTAAGTATTAACAAAAACAGATAGAGATAGATTATGTGGAAAT
GGCTGCATCCTTATGCAAAA

Product: heme exporter protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MFSAFFQVVAKELKGAFRHGSDILNPVWFFIIVVTLFPLGIGTDPALLQRIAPGIIWVAALLAALLSFERLFKDDFIDGS
LEQLMLSPFPLAWLVSAKVFSHWLLTGLPLLLVSPLLAAFLSLDIDTYFALFLTLLIGTPILSLFGAIGVALTVGLRKGG
ILLSLIMLPLSIPILIFSTMAIDAASYGQSYIGLLALLGAMLITAIILAPFAIAASLRVSVS

Sequences:

>Translated_222_residues
MFSAFFQVVAKELKGAFRHGSDILNPVWFFIIVVTLFPLGIGTDPALLQRIAPGIIWVAALLAALLSFERLFKDDFIDGS
LEQLMLSPFPLAWLVSAKVFSHWLLTGLPLLLVSPLLAAFLSLDIDTYFALFLTLLIGTPILSLFGAIGVALTVGLRKGG
ILLSLIMLPLSIPILIFSTMAIDAASYGQSYIGLLALLGAMLITAIILAPFAIAASLRVSVS
>Mature_222_residues
MFSAFFQVVAKELKGAFRHGSDILNPVWFFIIVVTLFPLGIGTDPALLQRIAPGIIWVAALLAALLSFERLFKDDFIDGS
LEQLMLSPFPLAWLVSAKVFSHWLLTGLPLLLVSPLLAAFLSLDIDTYFALFLTLLIGTPILSLFGAIGVALTVGLRKGG
ILLSLIMLPLSIPILIFSTMAIDAASYGQSYIGLLALLGAMLITAIILAPFAIAASLRVSVS

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=218, Percent_Identity=59.1743119266055, Blast_Score=206, Evalue=7e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 23802; Mature: 23802

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSAFFQVVAKELKGAFRHGSDILNPVWFFIIVVTLFPLGIGTDPALLQRIAPGIIWVAA
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LLAALLSFERLFKDDFIDGSLEQLMLSPFPLAWLVSAKVFSHWLLTGLPLLLVSPLLAAF
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLDIDTYFALFLTLLIGTPILSLFGAIGVALTVGLRKGGILLSLIMLPLSIPILIFSTM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AIDAASYGQSYIGLLALLGAMLITAIILAPFAIAASLRVSVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSAFFQVVAKELKGAFRHGSDILNPVWFFIIVVTLFPLGIGTDPALLQRIAPGIIWVAA
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LLAALLSFERLFKDDFIDGSLEQLMLSPFPLAWLVSAKVFSHWLLTGLPLLLVSPLLAAF
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLDIDTYFALFLTLLIGTPILSLFGAIGVALTVGLRKGGILLSLIMLPLSIPILIFSTM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AIDAASYGQSYIGLLALLGAMLITAIILAPFAIAASLRVSVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]