Click here to switch to the map view.

The map label for this gene is ccmC [H]

Identifier: 119946643

GI number: 119946643

Start: 3720947

End: 3721705

Strand: Reverse

Name: ccmC [H]

Synonym: Ping_3022

Alternate gene names: 119946643

Gene position: 3721705-3720947 (Counterclockwise)

Preceding gene: 119946644

Following gene: 119946642

Centisome position: 81.62

GC content: 42.42

Gene sequence:

>759_bases
ATGTGGAAATGGCTGCATCCTTATGCAAAACCTGAAAAGAGTTATCAATTAGCGGGCAAACTATTACCCTGGTTTGTTGT
TCTGACAATAATTACATTTATAATTGGCTTGCTGTGGGGACTGTTATTTGCCCCTGCAGATTATCAACAAGGTGATAGTT
TTCGAATAATTTATATTCATGTCCCCGCGGCTATGATGGCGATGGGGGCGTATTCCAGCATGGCTATTGCCGCCTTTGTG
GCTTTAGTGTGGCAAATTAGACTGGCAGAAATGACCGTTGCAGCAATGGCTCCCGTGGGTGCGGTGTTTACTTTTATTGC
CCTGTTTACCGGTGCTGCATGGGGAAAACCTATGTGGGGGGCATGGTGGGTTTGGGATGCACGTTTGACCTCAGAGCTGA
TATTACTGTTTATCTATTTAGGTATTATTGCTTTATATAATGCATTTTCTGATAAAGTATTAGCCGGCAGAGCCGCTTCA
ATCTTGACCTTAGTGGGAGTGATTAACTTACCTATTATTCATTACTCTGTTGTGTGGTGGAACACCTTGCATCAGGGGCC
AACTATCAGTAAATTTGGCAAACCATCCATGGCACTGGAAATGTTATGGCCCTTACTGATTATGATTTTAGCTTTTGCGA
CTTTATTAGGGGCGTTAACCTTGATGCGCTTTCGAAATGAAATTTTAGCACGTGAAAGTCATCGTCCCTGGGTAAGGCAG
TTAGCGTTAAACAATGTTAAAATGACGGGAAAAAATTAA

Upstream 100 bases:

>100_bases
GCAGCATCATTGCGTGTCAGCGTCAGTTGATAATATGCACTTATTATTTGATCCTAAAACCTAAAACCTAAGTATTAACA
AAAACAGATAGAGATAGATT

Downstream 100 bases:

>100_bases
GATGGCATTTAATTCATGGGCAGATTTTTTTGCAATGGGGGGCTACGGTTTTTATGTTTGGTTGGCTTACGGTATCTCTT
TTTTAGCGCTAGCTGTTTTA

Product: heme exporter protein CcmC

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmC [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MWKWLHPYAKPEKSYQLAGKLLPWFVVLTIITFIIGLLWGLLFAPADYQQGDSFRIIYIHVPAAMMAMGAYSSMAIAAFV
ALVWQIRLAEMTVAAMAPVGAVFTFIALFTGAAWGKPMWGAWWVWDARLTSELILLFIYLGIIALYNAFSDKVLAGRAAS
ILTLVGVINLPIIHYSVVWWNTLHQGPTISKFGKPSMALEMLWPLLIMILAFATLLGALTLMRFRNEILARESHRPWVRQ
LALNNVKMTGKN

Sequences:

>Translated_252_residues
MWKWLHPYAKPEKSYQLAGKLLPWFVVLTIITFIIGLLWGLLFAPADYQQGDSFRIIYIHVPAAMMAMGAYSSMAIAAFV
ALVWQIRLAEMTVAAMAPVGAVFTFIALFTGAAWGKPMWGAWWVWDARLTSELILLFIYLGIIALYNAFSDKVLAGRAAS
ILTLVGVINLPIIHYSVVWWNTLHQGPTISKFGKPSMALEMLWPLLIMILAFATLLGALTLMRFRNEILARESHRPWVRQ
LALNNVKMTGKN
>Mature_252_residues
MWKWLHPYAKPEKSYQLAGKLLPWFVVLTIITFIIGLLWGLLFAPADYQQGDSFRIIYIHVPAAMMAMGAYSSMAIAAFV
ALVWQIRLAEMTVAAMAPVGAVFTFIALFTGAAWGKPMWGAWWVWDARLTSELILLFIYLGIIALYNAFSDKVLAGRAAS
ILTLVGVINLPIIHYSVVWWNTLHQGPTISKFGKPSMALEMLWPLLIMILAFATLLGALTLMRFRNEILARESHRPWVRQ
LALNNVKMTGKN

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=248, Percent_Identity=59.2741935483871, Blast_Score=300, Evalue=7e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28356; Mature: 28356

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKWLHPYAKPEKSYQLAGKLLPWFVVLTIITFIIGLLWGLLFAPADYQQGDSFRIIYIH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
VPAAMMAMGAYSSMAIAAFVALVWQIRLAEMTVAAMAPVGAVFTFIALFTGAAWGKPMWG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AWWVWDARLTSELILLFIYLGIIALYNAFSDKVLAGRAASILTLVGVINLPIIHYSVVWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLHQGPTISKFGKPSMALEMLWPLLIMILAFATLLGALTLMRFRNEILARESHRPWVRQ
HHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LALNNVKMTGKN
HHHCCCEECCCC
>Mature Secondary Structure
MWKWLHPYAKPEKSYQLAGKLLPWFVVLTIITFIIGLLWGLLFAPADYQQGDSFRIIYIH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
VPAAMMAMGAYSSMAIAAFVALVWQIRLAEMTVAAMAPVGAVFTFIALFTGAAWGKPMWG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AWWVWDARLTSELILLFIYLGIIALYNAFSDKVLAGRAASILTLVGVINLPIIHYSVVWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLHQGPTISKFGKPSMALEMLWPLLIMILAFATLLGALTLMRFRNEILARESHRPWVRQ
HHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LALNNVKMTGKN
HHHCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]